Re: [galaxy-dev] Tests not being run on toolsheds?

2015-03-18 Thread Peter Briggs
Thanks Peter. I've reported the details of the specific tool that I was having problems with in my message to Dave B. planemo already looks really good, if it could handle the tool dependencies as well then that would be the icing on the cake. Thanks for your help, best wishes Peter On 18/0

Re: [galaxy-dev] Tests not being run on toolsheds?

2015-03-18 Thread Peter Briggs
Hello Dave Thanks for addressing the specific issue of the tests failing to run. Re my initial problem vis-a-vis a tool with tests that worked locally but failed on the toolsheds, this appears to be a result of the two environments using differing versions of perl. This caused the ordering of

[galaxy-dev] value_from_basic - KeyError: 'base_name', was: Tests not being run on toolsheds?

2015-03-18 Thread Peter Cock
Hi Dave, The following looks like a regression on the Test Tool Shed, the tests pass locally (using a recent revision), and on TravisCI using the current galaxy dev branch on GitHub: https://travis-ci.org/peterjc/pico_galaxy/builds/54870500 Problem tool: https://testtoolshed.g2.bx.psu.edu/view/pe

Re: [galaxy-dev] Tests not being run on toolsheds?

2015-03-18 Thread Dave Bouvier
Gentlemen, The issue with the nightly testing was due to a stalled test run blocking subsequent tests. I've cleared out that blockage and a manual test run appears to have completed successfully, as should future automated test runs. As always, feel free to let us know if you encounter any ad

Re: [galaxy-dev] Tests not being run on toolsheds?

2015-03-18 Thread Peter Cock
On Wed, Mar 18, 2015 at 10:13 AM, Peter Briggs wrote: > Hello Peter C. > > Thanks for your comments and advice Ironically after I sent that email the > tests for the next tool I looked at in the toolshed had been run in the past > couple of days. That's good. I can also confirm that the Test Tool

Re: [galaxy-dev] Tests not being run on toolsheds?

2015-03-18 Thread Peter Briggs
Hello Peter C. Thanks for your comments and advice Ironically after I sent that email the tests for the next tool I looked at in the toolshed had been run in the past couple of days. I'm interested because I've got a couple of tools that seem to work okay when I run the tests locally, but ar