I usually check this page:
http://www.cheetahtemplate.org/docs/users_guide_html/users_guide.html#SECTION00060
M.
On Fri, Jun 19, 2015 at 4:34 PM Alexander Vowinkel <
vowinkel.alexan...@gmail.com> wrote:
> Hi,
>
> someone knows a cheat sheet with all the commands supported by cheet
Thanks – I’ve attached the log. I just tried to start a worker and let it go to
the first reboot and then copied this log. I logged into the worker and it
looks ok (dmesg, etc) the only noticable thing was /mnt is empty (just a
lost+found directory) and I was expecting to see an nfs mount for g
Hi,
someone knows a cheat sheet with all the commands supported by cheetah?
Best,
Alexander
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, pleas
Ok, Great. I think I have part of this figured out. I have a conditional
input as specified:
Single-End
Paired-End
Paired Collection
In my section, I want to test how
Hi Nick,
Sorry to hear you're having trouble. I just tried a couple of scenarios and
they all worked as expected (e.g., with and without elastic IPs, different
instance types).
The main CloudMan log is located in /mnt/cm/paster.log, on both master and
worker instances (if you didn't download the s
The option in the GUI for selecting multiple datasets for a single
data parameter - causes multiple jobs to be created as you noted. If
you just place multiple="true" on your data input parameter - that
button will go away and all the datasets will be used for a single
job.
If your tool consumes
Hi,
thanks! Let me clarify myself on the multiple generation question.
When I do command line, I do this:
Bam,Bai -> Prog1 -> Bam,Bai(v2) -> Prog2 -> Bam,Bai(v3)
What I understand, what galaxy is doing ("always overwrite" [1]):
Bam,Bai -> Prog1 -> Bam,Bai(v2) -> Bam(v2) -> Bam,Bai(v2) ->
Prog2
Hi all - I have a tool which is essentially an entire NGS pipeline bundled
into a perl script and associated modules. I'd like to offer this tool to
users via Galaxy.
I'm trying to pass a bunch of fastq files to the tool, but noticed that
operating on multiple datasets creates a separate job for
Hi Alexander,
When you build the image, did you run the image cleanup step? RabbitMQ's
database needs to be cleaned up before building the image otherwise the
application won't start properly and the AMQP connection will never be
established.
You can also post the entire CloudMan's log somewhere a
Hi Alexander,
The wiki was out of date, was replaced
with some time back, e.g.
https://github.com/peterjc/galaxy_blast/commit/7501aa1f11747d008874e1192e47b09456eb2b19
(I'm not sure if the old naming still works or not).
There is also as well. e.g.
https://github.com/peterjc/galaxy_blast/blo
Hi David,
can you open an issue at
https://github.com/galaxyproject/docker-build ?
Thanks,
Nicola
Il
18.06.2015 21:55 David Trudgian ha scritto:
> Installed bowtie2 from
the toolshed, which brings in package_bowtie_2_2_4, which downloads
bowtie binaries from depot.galaxyproject.org
>
>
http
Hi David,
can you open an issue at
https://github.com/galaxyproject/docker-build ?
Thanks,
Nicola
Il
18.06.2015 21:55 David Trudgian ha scritto:
> Installed bowtie2 from
the toolshed, which brings in package_bowtie_2_2_4, which downloads
bowtie binaries from depot.galaxyproject.org
>
>
http
12 matches
Mail list logo
