Hello,
The Galaxy "Variant Annotator" tool uses this loc file :
tool-data/gatk2_picard_indexes.loc
This file is available in tool-data/ directory and completed but the
dropdown menu of "Variant Annotator" tool is empty.
more gatk2_picard_indexes.loc
#This is a sample file distributed with
Hi,
I am trying to run metaphlan on the Galaxy public website, but even a 25MB file
cannot be uploaded for analysis. It says the size is too large. And to run
metaphlan on local it is just a nightmare because there is absolutely no
tutorial of how to install all the prerequisites for material a
Hello,
I am trying to re-set my password but I am not receiving the required email.
Please let me know on how to proceed
Kind Regards,
Mariel
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Please keep all replies on the list by using "reply all"
in your mail client. To manage y
Hi Ryan,
try to look at the JS console. I suspect some problem with one of the
tools in your workflow.
Cheers,
Bjoern
Am 14.07.2015 um 22:02 schrieb Ryan G:
> Hmmm this only happens on a specific workflow. How can I debug this?
>
> On Tue, Jul 14, 2015 at 3:37 PM, Ryan G wrote:
>
>> It looks
Hmmm this only happens on a specific workflow. How can I debug this?
On Tue, Jul 14, 2015 at 3:37 PM, Ryan G wrote:
> It looks like a recent commit since 6/26 to 15.05 is break the workflow
> editor. I have a pipeline I'm trying to edit. I updated my instance of
> Galaxy and now when I try to
It looks like a recent commit since 6/26 to 15.05 is break the workflow
editor. I have a pipeline I'm trying to edit. I updated my instance of
Galaxy and now when I try to edit a workflow, the editor is stuck at
"Loading workflow editor".
__
I just fixed this here
https://github.com/galaxyproject/cloudman/commit/0f6ab132958ad57a338c66387112407edbc7632d#diff-9eba488c9175de87945a13d7b7228a6dR621
This required switching to SSD-based volumes on AWS and, besides actually
being able to create volumes up to 16TB now, it should give us better
We run the galaxy server as a vm… for 0-30 simultaneous users on a similar size
cluster.
16 virtual cores and 8G RAM.
I use 4 web handlers and 2 job handlers behind nginx.
Brad
On Jul 14, 2015, at 1:13 PM, Benjamin Datko
mailto:bda...@carc.unm.edu>> wrote:
Hello All,
We am attempting to buil
Hello All,
We am attempting to build a local galxay server and we are looking for
some advice.
The plan is to purchase a decdicated server to host galaxy and
communicate with our IBM System x3755 120 node computer cluster running
TORQUE/Maui resource manger and scheduler. Do you have an reco
Hi Bryan,
if you are running a old Galaxy instance this file was called
universe_wsgi.ini and was located in your Galaxy root folder.
Cheers,
Bjoern
On 14.07.2015 12:35, Bryan Hepworth wrote:
Hi
For the woefully inept, where in the heck is galaxy.ini stored?
I saw the documentation that s
Hi Bryan
There should be a "config/galaxy.ini.sample" file. Make a copy
"config/galaxy.ini" and modify it.
Hans-Rudolf
On 07/14/2015 12:35 PM, Bryan Hepworth wrote:
Hi
For the woefully inept, where in the heck is galaxy.ini stored?
I saw the documentation that said change 127.0.0.1 to 0.0
It is under config/. You’ll want to copy it from /config/galaxy.ini.sample
Thanks for using Galaxy,
Dan
On Jul 14, 2015, at 6:35 AM, Bryan Hepworth
wrote:
> Hi
>
> For the woefully inept, where in the heck is galaxy.ini stored?
>
> I saw the documentation that said change 127.0.0.1 to 0.0
It's in your config/ directory.
Sent from my iPhone
> On Jul 14, 2015, at 6:35 AM, Bryan Hepworth
> wrote:
>
> Hi
>
> For the woefully inept, where in the heck is galaxy.ini stored?
>
> I saw the documentation that said change 127.0.0.1 to 0.0.0.0 and the file
> name, can't find it to do
Hi
For the woefully inept, where in the heck is galaxy.ini stored?
I saw the documentation that said change 127.0.0.1 to 0.0.0.0 and the file
name, can't find it to do so.
I know it all works as I've installed a module and that all shows up and works
on localhost.
Thanks
Bryan
__
>
> She got that error message when she clicked on settings and tried to view
> saved histories.
It looks like this error when loading '/history/view' was fixed with
release_13.02:
https://github.com/galaxyproject/galaxy/commit/3deac8edfba8e8088de855789a28e7d3a328b9b5
If possible, you could upda
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