I'm going to trim the replies a bit so my comments are easier to find.
> Am 12.09.2015 um 00:09 schrieb Martin Čech:
>> In this case the naming kinda makes sense to me (lapps_stanford_2_0_0 and
>> lapps_stanford_2_1_0 that is). However could the remote Standford API
>> version be a parameter of t
Hi,
I want to be able to use different AWS worker instance types than are
currently provided in the cloudman "Add worker nodes" menu.
Say for example I am interested in using AWS 'r3.*' instance types as my
workers, how can I add these to be available in the cloudman interface?
Thanks,
David
__
Hi,
I'm not sure FASTQC can deal with gz files natively.
In the documentation I found they use zcat:
http://www.bioinformatics.babraham.ac.uk/projects/fastqc/INSTALL.txt
So maybe this is your problem?
Bjoern
> Hi Bjoern,
>
> Thank you for your response. To answer your question, yes I am runn
Am 12.09.2015 um 00:09 schrieb Martin Čech:
> Keith, please see the comments inline.
> thanks
> M.
>
> On Fri, Sep 11, 2015 at 4:54 PM Suderman Keith
> wrote:
>
>> Hi Martin,
>>
>> On Sep 11, 2015, at 12:44 PM, Martin Čech wrote:
>>
>> Hi Keith,
>>
>> how is the NLP category working for you?
Hi Bjoern,
Thank you for your response. To answer your question, yes I am running the
fastqc on a compressed file (fastq.gz) but not tarfile. The files are in the
file system and I Link them to galaxy but not “Copying” them, and I think that
is the issue of my problem which I am I am trying
