Re: [galaxy-dev] not sure what I can do about this...

2015-10-01 Thread Philip Mabon
I will give it a try today or tomorrow. Thanks On Thu, Oct 1, 2015 at 1:21 PM Nicola Soranzo wrote: > Thanks Philip, > I've updated the prokka package accordingly and I have also updated other > dependencies (Prokka 1.11, Barrnap 0.7, BLAST 2.2.31, HMMER 3.1b2). > > Edgar, I'd like to know if t

Re: [galaxy-dev] External User Authenticaion

2015-10-01 Thread Ryan G
I finally got around to this and all is working well. I submitted 2 patches to remoteuser.py to assist in debugging incorrect set ups. Last question - When a user logs out, they get the page ""Access to Galaxy user controls is disabled". I've set the remote_user_logout_href parameter to a differ

Re: [galaxy-dev] not sure what I can do about this...

2015-10-01 Thread Nicola Soranzo
Thanks Philip, I've updated the prokka package accordingly and I have also updated other dependencies (Prokka 1.11, Barrnap 0.7, BLAST 2.2.31, HMMER 3.1b2). Edgar, I'd like to know if the new version installs and works for you, since I'm not using it at the moment. Cheers, Nicola On 30/09/1

Re: [galaxy-dev] Documentation of Galaxy API metadata objects

2015-10-01 Thread Carl Eberhard
Hi, Clare When working on the serializers and managers, I incorrectly moved the file_name attribute over as file_path. In a later commit, I re-added file_name and made file_path still available. Sorry for the confusion. They are the same variable under two different keys (the 'path' _remap uses t

Re: [galaxy-dev] Documentation of Galaxy API metadata objects

2015-10-01 Thread Clare Sloggett
Thanks Martin! I could have the details wrong for the API change example I gave (in fact, checking this was part of my motivation for asking about documentation, I wasn't sure whether our local setup was normal, and I would like our scripts to be reusable on other systems). But I'm fairly certain