Hi All,
Trying to setup a Galaxy cluster using Rocks Gridengine
OS is Centos 6.5.
psql (9.1.18)
shell bash
Getting error messages in paster.log below. I can submit jobs to Gridengine
using qsub so this is not an issue. But when trying to "Upload File from you
computer”, history indicates jobs
Thanks Greg for this nice example, I guess this is useful for others as
well!
I will try to put it into the Wiki soon.
Am 30.09.2015 um 20:05 schrieb Greg Von Kuster:
> Here’s the answer to my question:
>
> The ability to use associated dynamic select lists on Galaxy tool forms where
> selecting
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Hi Peter,
That's great, worked perfectly.
Thank you very much,
Martin
On 10/02/2015 11:26 AM, Peter Cock wrote:
> If you have a wrapper script, then you can do it there.
>
> It is also possible in the XML directly by building a composite
> command
If you have a wrapper script, then you can do it there.
It is also possible in the XML directly by building a composite
command with && separators (which must be escaped as
&& or using CDATA), e.g.
https://github.com/galaxyproject/tools-devteam/blob/master/tools/samtool_filter2/samtool_filter2.xm
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Hi Peter,
Thanks for the reply. Are there any examples of this in action? Is it
done in the xml wrapper somewhere or do I need to write a script that
does this and then call the Rscript?
Cheers,
Martin
On 10/02/2015 11:13 AM, Peter Cock wrote:
> C
Creating symlinks with normal extensions is a common
approach here where the Galaxy filenames won't work.
Peter
On Fri, Oct 2, 2015 at 10:57 AM, Martin Vickers wrote:
>
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> Hi all,
>
> I've been tasked with getting someone's R script working in o
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Hi all,
I've been tasked with getting someone's R script working in our galaxy
installation and I'm struggling to resolve an issue with an bioconductor
function that appears to not like the galaxy naming convention (e.g.
dataset_2.dat) for the bam in
