I agree that it would be very nice to get the data flowing between each
of the tools and to be able to mix/match with other tools. That is an
area of Galaxy tool-dev that I'm less familiar with, so any help would
be greatly appreciated.
As for the manual massaging, I agree, however, at this po
Dear All,
is it possible to get any help in a subject of pbs_python problems?
Especially Galaxy crash related to this issue.
Let me remind:
I encountered exactly the same problem:
http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132.html
However my Galaxy instance comple
Hi,
Am 06.10.2015 um 15:48 schrieb Christian Brenninkmeijer:
> HI Bjorn,
>
> I now see you are bringing in libmxl2 in dexseq. As this is needed by
> various R packages and already installed by fontconfig would it be
> worth making it a first class dependency of package_r_3_2_1
We could think abo
Hi Lance,
I looked at this a bit ago and had similar concerns, particularly with the
outputs and inputs not being well-defined. In addition to the output tar ball
—> local, extract —> upload not being great, as you mention, the input
datatypes, etc, could use some work — in the very least, we s
HI Bjorn,
I now see you are bringing in libmxl2 in dexseq.
As this is needed by various R packages and already installed by fontconfig
would it be worth making it a first class dependency of package_r_3_2_1
I also see that in dexseg you specifically say "libxml2 needs to be sourced
after R"
Is
Hi Christian,
what is needed from the TS site? Do you have any changes that are needed
in the cairo package or R package?
For me everything is now working and the only thing you need to do is to
specify the Rcairo tarball in your tool_dependendy file. Like here:
https://github.com/galaxyproject/
i finally got Cairo installed into R inside galaxy.
As well as cairo needing fontconfig to add cairo into R also requires libmxl2
I also changed the R install.
1. Never use the zip as it has hard coded environment variables in it
2. The set_environment variable in the R install to "prepend_to" PK
