Re: [galaxy-dev] tool-shed delete problem

2015-11-02 Thread Björn Grüning
Hi Alper, there is no option to delete a repository, but you can deprecate one. Is this what you are trying? Cheers, Bjoern Am 03.11.2015 um 03:30 schrieb Kucukural, Alper: > Hi, > Could you help me to delete crisprseek from https://toolshed.g2.bx.psu.edu/? > I am the owner but cannot delete. I

[galaxy-dev] tool-shed delete problem

2015-11-02 Thread Kucukural, Alper
Hi, Could you help me to delete crisprseek from https://toolshed.g2.bx.psu.edu/? I am the owner but cannot delete. I got “Internal Server Error”. Thanks, Alper ___ Please keep all replies on the list by using "reply all" in your mail client.

Re: [galaxy-dev] Developing package wrappers

2015-11-02 Thread Björn Grüning
Hi Tiago, in the following my few comments. If you like to submit this to IUC-tools a WIP would be nicer to comment on. * Booleans can be treated like this. Note the changed truevalue and falsevalue. This will reduce this: #if str ($selExtraOpts.search_complete_random_tree) == "true": --sea

Re: [galaxy-dev] Developing package wrappers

2015-11-02 Thread Tiago Antao
Hi, On Tue, 20 Oct 2015 14:48:08 +0200 Bjoern Gruening wrote: > What kind of dependencies do you have? Python/Perl? > Consider contributing to tools-iuc > (https://github.com/galaxyproject/tools-iuc). We can probably help > you and guide you your way. Before I start working on RAD-Seq, I had

[galaxy-dev] November Galactic News: New papers, events, jobs, servers, and more

2015-11-02 Thread Dave Clements
Hello all, The *November Galactic News * is hot off the presses. - 81 new publications, including 8 highlighted pubs - Event News

Re: [galaxy-dev] netcdf 4.3 error

2015-11-02 Thread Björn Grüning
Hi Olivier, can you change it here with a PR: https://github.com/galaxyproject/tools-iuc/blob/master/packages/package_netcdf_4_3/tool_dependencies.xml We will upload this package and fix it as soon as the patch gets merged. Cheers, Bjoern Am 02.11.2015 um 16:23 schrieb Olivier CLAUDE: > Hello,

[galaxy-dev] netcdf 4.3 error

2015-11-02 Thread Olivier CLAUDE
Hello, I have found something strange while trying to install netcdf 4.3 : The error message: “ ” the link: ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.1.1.tar.gz Which is now located here: ftp://ftp.unidata.ucar.edu/pub/netcdf/

Re: [galaxy-dev] installable revisions for repository suite definitions

2015-11-02 Thread Dave Bouvier
Aaron, Repository suite definitions are designed to only allow the latest revision to be installable. My recommendation in this case would be to define two separate suites tagged in some descriptive way, so the individual use cases would have their appropriate suites. - Dave Bouvier http://g

[galaxy-dev] new to galaxy

2015-11-02 Thread Olivier CLAUDE
Hi Yvan and Marius, Thanks to both of you almost everything is ok now. I still experience some issues, but I’ll try some things on my own before asking questions. Thank you Marius for the invite! M Olivier CLAUDE- PhD Student INSERM/UPMC UMRS ICAN 1166 – Equipe 2 Faculté de médec