Re: [galaxy-dev] tool data_column param issue under workflow mode

2015-11-25 Thread Aysam Guerler
Thx for reporting this. I am looking into it. On Wed, Nov 25, 2015 at 4:53 AM, Nils Paulhe wrote: > Hi! > > Same problem here but only if my workflow start with an "input type" tool > or any other tool, i can not select an option in list for workflow's other > tools > cf: > https://dl.dropboxuse

Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-25 Thread Shane Kelly
Hi Hans-Rudolph, I am grateful to you (and all the other people who share their knowledge on this list) for pointing out a ready made, in-built solution to what I perceived as a problem. Many thanks, Shane >Hi Shane, > > >please allow me to jump in late - since you are looking fo

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-25 Thread mabernard
Hi, 7th and 8th would be great for me. But I agree with Björn, a github issue to share our ideas and a doodle is a better way to fixe it. Have a nice day Maria Björn Grüning a écrit : Am 24.11.2015 um 20:36 schrieb Tiago Antao: On Tue, 24 Nov 2015 10:38:05 +0100 mabernard wrote: So I'm

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-25 Thread mabernard
Sorry, I answer too quickly. 2 days are a good duration, not too short and easy to schedule. M mabernard a écrit : Hi, 7th and 8th would be great for me. But I agree with Björn, a github issue to share our ideas and a doodle is a better way to fixe it. Have a nice day Maria Björn Grünin

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-25 Thread Tiago Antao
Hi, The doodle is available here: http://doodle.com/poll/hcc83a4yzgnecq4w The issue will be out soon... On Wed, 25 Nov 2015 09:05:23 +0100 mabernard wrote: > Hi, > > 7th and 8th would be great for me. But I agree with Björn, a github > issue to share our ideas and a doodle is a better way

Re: [galaxy-dev] tool data_column param issue under workflow mode

2015-11-25 Thread Nils Paulhe
Hi! Same problem here but only if my workflow start with an "input type" tool or any other tool, i can not select an option in list for workflow's other tools cf: https://dl.dropboxusercontent.com/u/86878089/Screen%20Shot%202015-11-25%20at%2010.37.26.png definitely not a data type problem ^^' si

Re: [galaxy-dev] tool data_column param issue under workflow mode

2015-11-25 Thread Christian Brenninkmeijer
Hi If you load a tabular table with type auto there is a possibility that it incorrectly sniffed as a csv file. With type csv the columns are split on commas and not tabs so the data appears in one column. This is especially the case for tab separated files that do not have row names and ther

Re: [galaxy-dev] Does anybody know if ts (a task scheduler) is supported under Galaxy.

2015-11-25 Thread Hans-Rudolf Hotz
Hi Shane, please allow me to jump in late - since you are looking for a simple solution: why not rely just on the built in job scheduler? Have a look at ~/config/job_conf.xml.sample_advanced Even on a single box, you can set up different queues with individual restrictions. Hans-Rudolf