Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Björn Grüning
Great, still need to figure out why. Thanks, Bjoern Am 27.11.2015 um 23:33 schrieb Jose Juan Almagro Armenteros: > Yes, I had that error but Devon Ryan point me out the solution in this > thread: https://biostar.usegalaxy.org/p/14989/. Now deepTools works > correctly for me. > > Regards, > > Jo

Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Jose Juan Almagro Armenteros
Yes, I had that error but Devon Ryan point me out the solution in this thread: https://biostar.usegalaxy.org/p/14989/. Now deepTools works correctly for me. Regards, Jose 2015-11-27 22:01 GMT+01:00 Björn Grüning : > Awesome! > > Sorry for the inconvenience ...! > Is matplotlib installing for yo

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-27 Thread Tiago Antao
Hi, I have now drafted the issue: https://github.com/galaxyproject/tools-iuc/issues/422 Comments/feedback most appreciated... ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to

Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Björn Grüning
Awesome! Sorry for the inconvenience ...! Is matplotlib installing for you? Can you confirm this error? https://github.com/galaxyproject/tools-iuc/issues/417 Thanks, Bjoern Am 27.11.2015 um 18:21 schrieb Jose Juan Almagro Armenteros: > Hello Bjoern, > > Yes, that solved the problem. > > Thank

Re: [galaxy-dev] RAD-Seq Hackathon: Doodle pool

2015-11-27 Thread Tiago Antao
Hi, Given the current doodle answers, I think the safest bet it: 7 and 8 of March, 2016. If this presents a problem to anyone, please let us know... Tiago On Tue, 24 Nov 2015 13:53:19 -0700 Tiago Antao wrote: > Hi, > > I have created a doodle pool for the Hackathon: > > http://doodle.com/po

Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Jose Juan Almagro Armenteros
Hello Bjoern, Yes, that solved the problem. Thank you! Regards, Jose 2015-11-27 17:59 GMT+01:00 Björn Grüning : > Hi Jose, > > can you please try to set: > > enable_beta_tool_command_isolation = True > > in your galaxy.ini file? > > Thanks, > Bjoern > > Am 27.11.2015 um 16:01 schrieb Jose J

Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Björn Grüning
Hi Jose, can you please try to set: enable_beta_tool_command_isolation = True in your galaxy.ini file? Thanks, Bjoern Am 27.11.2015 um 16:01 schrieb Jose Juan Almagro Armenteros: > I bit more of information. I have this problem running tools from the last > version of deepTools (1.5.11.0) , as

Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Jose Juan Almagro Armenteros
I bit more of information. I have this problem running tools from the last version of deepTools (1.5.11.0) , as bamCompare or bamCorrelate. However, when I run the same tools from the previous version (1.5.9.1.0), they work correctly. I have reinstalled this last version but nothing. Is it possible

Re: [galaxy-dev] Bx-python and numpy eggs

2015-11-27 Thread Jose Juan Almagro Armenteros
I have tried to remove the bx-python and numpy eggs and then I have fetched them again but this didn't work neither. Any idea why bx-python is not recognizing the proper numpy version? Regards, Jose 2015-11-27 0:53 GMT+01:00 Jose Juan Almagro Armenteros : > Hello, > > I am in the master branc