Re: [galaxy-dev] A Report Calc tool which provides a scripting language and interpreter for text mining and quality control

2016-02-09 Thread Dooley, Damion
Hi folks, I'm back with one more feeler to gauge interest in the approach we are trying out for a Galaxy quality control tool to interject into existing bioinformatics pipelines. With some nudging (thanks Bob) I've implemented basic infix math expressions. As well we're trying out the inclusion o

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-02-09 Thread Peter Cock
Good to know :) https://github.com/peterjc/galaxy_blast/pull/77 The pull request looks good - sadly distracted by TravisCI failures from Galaxy/planemo/dependency changes. Thanks, Peter On Tue, Feb 9, 2016 at 3:28 PM, Floreline TOUCHARD wrote: > Hi, > > sorry for the late response ! I tested

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-02-09 Thread Floreline TOUCHARD
Hi, sorry for the late response ! I tested the modifications proposed in the "Allow to select multiple database" pull request and it works !!! Thanks a lot ! Floreline. P.S : I'm not familiar with all github functionnalities yet, but I will work on it ;) 2016-01-20 16:07 GMT+01:00 Peter Cock :

Re: [galaxy-dev] Galaxy broken after update to 16.01

2016-02-09 Thread Peter van Heusden
Mattias, what does your supervisord config look like? Specifically, does it contain an environment variable to direct the Galaxy handler to the correct virtualenv? Peter On 9 February 2016 at 16:03, Matthias De Smet wrote: > Hi all, > > > We were tracking the galaxy master branch on our local s

[galaxy-dev] Galaxy broken after update to 16.01

2016-02-09 Thread Matthias De Smet
Hi all, We were tracking the galaxy master branch on our local server and are looking to migrate to v16.01. The galaxy processes are managed bij supervisor as shown here ( https://wiki.galaxyproject.org/Admin/Config/Performance/Scaling). After updating all dependencies in our venv we tried to r

[galaxy-dev] NGS.plot script freeze

2016-02-09 Thread Philipp Rathert
Dear All, we are trying to use NGS-plot on our local docker-galaxy-stable instance. The script freezes whenever we click on the tool. Does anybody have an idea what is wrong and how to fix this? There is no error message or anything. Thank you very much. Kind regards, Philipp __