[galaxy-dev] Problems uploading files to galaxy

2016-03-07 Thread Lemley, Rob
Hi, I'm hoping you can help out with a problem we are experiencing uploading files to our own Galaxy instance. When a user tries to upload a file to Galaxy through their web browser, the job errors out: Traceback (most recent call last): File "/gpfs/fs1/sfw/cibem_galaxy/app/galaxy/tools/data

[galaxy-dev] iRODS

2016-03-07 Thread Mohamed Kassam
Dear all, I would like to use our interlan iRODs to pull data. I searched and i find that there is an object store for that. How it works ? DO I need to configure something else ? Thanks in advance, Mohamed ___ Please keep all replies on t

Re: [galaxy-dev] IE11 display problem

2016-03-07 Thread Carl Eberhard
Hi, Floreline Does this happen every time you try to open Galaxy in IE11? Or once every couple of times? I'm unable to reproduce this locally with IE11 (or Edge). What OS are you using? Windows 7 or 10? What version of Galaxy are you running? Thanks, Carl On Mon, Mar 7, 2016 at 7:31 AM, Flore

[galaxy-dev] iRODS

2016-03-07 Thread Mohamed Kassam
Dear all, I would like to use our interlan iRODs to pull data. I searched and i find that there is an object store for that. How it works ? DO I need to configure something else ? Thanks in advance, Mohamed ___ Please keep all replies on t

Re: [galaxy-dev] UnicodeDecodeError with 16.01

2016-03-07 Thread Dannon Baker
Ok, glad it's working for you now, but just swapping to English isn't the long term solution I'd want to recommend :) I had started some work on this a little while ago with Bjoern in https://github.com/dannon/galaxy/commit/f9c3890135758a37c78aa18fe8b100be5895e67b, but I wasn't particularly happy

Re: [galaxy-dev] UnicodeDecodeError with 16.01

2016-03-07 Thread Anthony Bretaudeau
Thanks all for your (very efficient) help! I added this to the env, and now it works: export LC_ALL=en_US.UTF-8 export LANG=en_US.UTF-8 export LANGUAGE=en_US.UTF-8 It was fr_FR.UTF-8 before Anthony On 07/03/2016 16:15, Dannon Baker wr

Re: [galaxy-dev] UnicodeDecodeError with 16.01

2016-03-07 Thread Dannon Baker
Before changing things, what's the output of 'locale'? You'll need to specify the .UTF-8 variant of that, though it need not be en_US. Python's datetime functions use the configured locale, which when it isn't the UTF-8 variant, outputs incompatible encodings. On Mon, Mar 7, 2016 at 10:09 AM,

Re: [galaxy-dev] UnicodeDecodeError with 16.01

2016-03-07 Thread Marius van den Beek
Also it is sometimes necessary to remove outdated compiled mako. By default this is in database/compiled_templates/ On 7 March 2016 at 16:07, Björn Grüning wrote: > Can you set your locale to something US UTF8 and restart your Galaxy. > > I guess this is happening because of some dates do are no

Re: [galaxy-dev] UnicodeDecodeError with 16.01

2016-03-07 Thread Björn Grüning
Can you set your locale to something US UTF8 and restart your Galaxy. I guess this is happening because of some dates do are not in UTF-8. Am 07.03.2016 um 16:03 schrieb Anthony Bretaudeau: > Hi, > On our prod server that we udated to 16.01, I get this error when trying > to access the list of sa

[galaxy-dev] UnicodeDecodeError with 16.01

2016-03-07 Thread Anthony Bretaudeau
Hi, On our prod server that we udated to 16.01, I get this error when trying to access the list of saved histories... Do you see what's happening? Anthony URL: https://galaxy.genouest.org/history/list File '/opt/galaxy-dist/lib/galaxy/web/framework/middleware/error.py', line 151 in __call__

[galaxy-dev] IE11 display problem

2016-03-07 Thread Floreline TOUCHARD
Hi Galaxy team, I try to use IE11 but I have a problem with the display : I get a blank Web page (I can only see the logo and "Galaxy" on the tab) . The javascript console gives me the same errors as described here ( https://lists.galaxyproject.org/pipermail/galaxy-dev/2014-July/020078.html). Mo