Re: [galaxy-dev] removing tool from toolshed

2016-03-20 Thread Von Kuster, Greg
Hi Jose, You can currently only deprecate the repository. To allow for reproducibility, it cannot be completely deleted in case it has been installed into a Galaxy instance. Deprecating the repository will eliminate it from most Tool Shed features and hide it from most views. Use the Reposit

[galaxy-dev] Galaxy drops my tenth xml tool parameter

2016-03-20 Thread rbrown1422
Good afternoon, It appears my Galaxy updated overnight and has caused issues that I am fairly certain I didn't introduce. Did something change or what did I do? 1 the Parameter $GALAXY_ROOT_DIR/tools/Heatmaps/' is not showing up see bottom where I dump parameters. 2. The repeat seems to a

Re: [galaxy-dev] Cloudman & AWS IAM_PROFILE support?

2016-03-20 Thread Enis Afgan
Ryan; Chris: I just added the ability to launch instances into non-default VPCs to CloudLaunch. This is live on https://launch.usegalaxy.org/, under Advanced startup options. Feel free to give it a shot and let me know if you encounter any issues. On Thu, Mar 17, 2016 at 10:09 AM, Enis Afgan wro

Re: [galaxy-dev] planemo update failing on testtoolshed

2016-03-20 Thread Björn Grüning
Hi Peter, can you try to delete files with the web interface? I saw the tool name, do you know this small tool? https://github.com/bgruening/galaxytools/blob/master/tools/splitfasta/splitFasta.xml Cheers, Bjoern Am 18.03.2016 um 20:03 schrieb Peter van Heusden: > Hi there > > I'm trying to upd