We Iocally compile 2.7.8 and keep it in a distinct location that our paths
references.
This is very easy and has worked well for us.
Please excuse any typos -- Sent from my iPhone
> On Mar 21, 2016, at 5:32 PM, Peter Cock wrote:
>
> Hi D. K.,
>
> We're currently trying a locally compiled P
Hi Peter,
I worked on it today and I found the reason of this bug. In the
upload.py tool, the existence of dataset.space_to_tab is tested. In the
old version of the data library, when the option was unchecked, the
value space_to_tab was None and the test worked. But in the new version
the va
Hi D. K.,
We're currently trying a locally compiled Python 2.7 (from source)
under the shared Galaxy mount for use with a CentOS 6 cluster
and Galaxy server.
This seems to be working once we got the $PATH working for
cluster jobs (initially they would try to set the Galaxy metadata
using the syst
Hi guys,
when I try to run "Filter SAM or BAM, output SAM or BAM" from SAMtools on our
local galaxy instance, we get this error:
Traceback (most recent call last):
File
"/home/jvdelarosa/Bioinformatica/Software/galaxy/lib/galaxy/jobs/runners/__init__.py",
line 166, in prepare_job
job_wra
Hi Daniel,
I've been using python27 from CentOS Software Collections for quite some
time. It's a bit annoying because you have to remember to load it, but
it is surely doable.
Cheers,
Nicola
On 21/03/16 17:46, D K wrote:
Hi Galaxy Devs,
This may be premature but I read that for Galaxy after
Hi Galaxy Devs,
This may be premature but I read that for Galaxy after 16.01 that the plan
is for python 2.6 to no longer be supported. I'm currently running CentOS
6.6 which uses python 2.6. In order to be able to use newer versions of
Galaxy is my only option to upgrade to a newer version of Cen
This mapping is not automatic - you need to write a small Python
method to take these parameters specified by the user and map them to
your cluster parameters. These methods are called dynamic job
destinations and described on the wiki at:
https://wiki.galaxyproject.org/Admin/Config/Jobs#Dynamic_D
Hi,
We, actually have problems with installation of some tools using the
galaxy web interface or the API throught the script
install_tool_shed_tools.py (
https://github.com/galaxyproject/ansible-galaxy-tools/blob/master/files/install_tool_shed_tools.py
).
When a tool has a package dependency, the
Hi all
Since we upgraded our Galaxy installation from 15.05 to 15.10 (plus the
recent security fix, changeset: 17161:3f95c21b1a85), the "Edit settings"
button in Trackster is no longer working. The window, which normally
allows you to select the colors, etc. doesn't show up anymore.
This hap
Hi Peter,
I tested it on the last version of the dev and master branches.
step-by-step :
I click on the "shared data/Data Libraries", I select my library and I
click on the button to upload a file and I select the option "from User
Directory". I select my fastqsanger file (sequences headers ar
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