Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-02 Thread Suderman Keith
Hi Björn, Have you pushed the new version to the Docker Hub? When I run the galaxy-stable image with the -e BARE=true option I still get a Galaxy instance with the default tools. Also, does this really give me a “bare” Galaxy instance, or just a Galaxy instance with an empty tool_conf.xml fil

Re: [galaxy-dev] Galaxy Bare/Core and custom upload tool

2016-04-02 Thread Suderman Keith
Hi Stephan, Thank you for the pointers, they will definitely help. Would you be willing to share any of the code you have for the upload tool? Will you be at the LREC conference in Portorož? It might be fun to arrange a meet up of all Galaxy users if we can. Cheers, Keith > On Mar 31, 2016,

Re: [galaxy-dev] init scripts version 16.01

2016-04-02 Thread Marius van den Beek
Hello Eric, indeed this is an oversight, this should have been mentioned with the release notes. I didn't test this, but it might be sufficient to replace PYTHON="/usr/bin/python" with PYTHON="". If that is sufficient for you, let us know and we will update the wiki and adjust the script in https:

Re: [galaxy-dev] init scripts version 16.01

2016-04-02 Thread Eric Kuyt
Anything new about the init scripts. Hey guys, today I updated to the latest version of galaxy. No I noticed that because of the new virtualenv/wheel startup procedure, the init scripts as mentioned here https://wiki.galaxyproject.org/Events/GCC2012/TrainingDay/WS5?highlight=%28init.d%29 are not