Re: [galaxy-dev] Any tool that uses Composite Datatypes

2016-05-16 Thread Björn Grüning
Hi, a very good example is the makeblastdb wrapper. You can find it here: https://github.com/peterjc/galaxy_blast/blob/master/tools/ncbi_blast_plus/ncbi_makeblastdb.xml#L91 Hope this helps, Bjoern > Hi All > > I am creating a database (neo4j) composite datatype in galaxy. The > database has fi

[galaxy-dev] Removing stale references from a history

2016-05-16 Thread Scott Szakonyi
Hello, Due to some problems on our servers, one of our users has file references that are no longer valid in one of his histories. He's requested that I remove them, but I don't see any particular way to do so through the interface. Is there any way to achieve this? I've poked around in the databa

[galaxy-dev] GCC2016 Deadlines this Friday & Conference schedule

2016-05-16 Thread Dave Clements
Hello all, This is just a reminder that* there are some key deadlines this Friday, May 20:* - Early registration ends . After Friday registration rates go up by over 40%. - Poster abstracts are du

[galaxy-dev] Cufflinks version

2016-05-16 Thread Gaye Saginc
Hi, Which Cufflinks version is used in Galaxy? On top of the Cufflinks page it is stated " *Cufflinks*transcript assembly and FPKM (RPKM) estimates for RNA-Seq data (Galaxy Version 2.2.1.0) ". Is this the version of Galaxy or the Cufflinks tool? Thank you! Gaye _

[galaxy-dev] Any tool that uses Composite Datatypes

2016-05-16 Thread Ziphozakhe Mashologu
Hi All I am creating a database (neo4j) composite datatype in galaxy. The database has files flat files within a directory. Is there a tool anyone can point me to, that defines, uses/produces a composite datatype as output to use as an example? You assistance will be highly appreciated. Zipho _