Re: [galaxy-dev] Infinite recursion on conda dependency manager

2016-06-20 Thread Rathert , Philipp , Dr .
Hi Björn, this is not working  root@galaxy:/galaxy-central# export PATH=/galaxy-central/tool_deps/_conda/bin/:$PATH root@galaxy:/galaxy-central# conda install -y -q conda=3.19.3 bash: conda: command not found cheers, Philipp -Original message- From: Björn Grüning  Sent: M

Re: [galaxy-dev] Infinite recursion on conda dependency manager

2016-06-20 Thread Björn Grüning
Hi Philipp, you are inside of the Docker container? Can you do a: export PATH=/galaxy-central/tool_deps/_conda/bin/:$PATH conda install -y -q conda=3.19.3 Ciao, Bjoern Am 20.06.2016 um 13:01 schrieb Rathert, Philipp, Dr.: > Dear all, > > > > > > I am trying to install bowtie as a depend

Re: [galaxy-dev] History is not up-to-date

2016-06-20 Thread Björn Grüning
Hi, the image has the latest version, so you should be able to just repull the image. Cheers, Bjoern Am 20.06.2016 um 12:16 schrieb Nicola Soranzo: > Hi Philipp, > this has been fixed in the mean time on the release_16.04 branch of Galaxy, > see > > https://github.com/galaxyproject/galaxy/pull

Re: [galaxy-dev] History is not up-to-date

2016-06-20 Thread Rathert , Philipp , Dr .
Dear Nicola, I am using the 16.04 release. did you implement changes in this one recently? Cheers, Philipp -Original message- From: Nicola Soranzo  Sent: Monday 20th June 2016 12:16 To: Rathert, Philipp, Dr. ; 'Carl Eberhard' Cc: galaxy-dev@lists.galaxyproject.org Subject: Re:

Re: [galaxy-dev] History is not up-to-date

2016-06-20 Thread Rathert , Philipp , Dr .
Hi Carl, it looks like the time is not correct.   System Time: 2016-06-20T09:30:00.038328386Z  EventsListeners: 0  Init SHA1:   Init Path: /usr/local/bin/docker  Docker Root Dir: /mnt/sda1/var/lib/docker Labels:  provider=virtualbox the clock on my mac says 11:25 Is there an e