Hi Gildas,
When datatypes were moved to the Tool Shed, I
think the idea was to eventually have only a core
set of topic-neutral datatypes (plain text, tabular,
etc) in Galaxy itself. That does seem sensible.
I'm not quite sure why policy has returned to a
larger centralised set - but limitations
Hi,
I’m trying to configure a new instance of Galaxy and I want to use LDAP for
user authentication. I have taken a look at this wiki page:
https://wiki.galaxyproject.org/Admin/Config/ExternalUserAuth
I followed the instructions and when I looked into the auth_conf.xml file, I
was unsure of wh
Hi all,
If indeed, datatypes return within the Galaxy distribution, can we imagine
propose different datatypes_conf.xml?
Galaxy isn’t anymore dedicated to NGS purpose. It is use also for metabolomics,
proteomics, …
So it could be great to propose 1 "common" list of datatypes (text, tabular,
I have a work-in-progress branch and pull request here,
https://github.com/peterjc/galaxy/tree/blast_datatypes
https://github.com/galaxyproject/galaxy/pull/2696
The Galaxy TravisCI tests looked fine.
Peter
On Mon, Aug 1, 2016 at 11:18 AM, Peter Cock wrote:
> Dear all,
>
> I ran this past the IU
Hi Nicola,
thanks a lot for the help! Yes, it's a self-signed certificate, I didn't bother
with letsencrypt yet ;-).
So now the error turned to
ConnectionError: GET: error 401: b'\n\n401 Authorization
Required\n\nAuthorization Required\nThis
server could not verify that you\nare authorized to
Hi Sarah!
I guess that your problem is with an untrusted certificate, you can get
one for free at https://letsencrypt.org/
You can disable certificate verification in bioblend as in the example
below:
import bioblend.galaxy
gi = bioblend.galaxy.GalaxyInstance(url=my_server, key=my_key)
gi.ve
Dear all,
I ran this past the IUC first, and the only comments were
positive.
Although I wasn't at GCC2017 to discuss this in person,
I understand that the Galaxy Team now encourages
widely used datatypes to be included in the main Galaxy
repository, rather than distributed via the Tool Shed.
To
Dear all,
since the recent update to 16.04 I get the following error when trying to
import a file from a user directory to a data library:
AssertionError: use_remote_user is set but HTTP_REMOTE_USER header was not
provided
I use apache as a proxy and use an LDAP server for authentication. In o
Hi there
Does anyone have the run-as-user support working with Galaxy 16.04? If so,
could you describe your config?
Thanks,
Peter
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