[galaxy-dev] Fwd: Workflow Execution Files

-- Forwarded message -- From: Katherine Beaulieu Date: Mon, Oct 24, 2016 at 2:55 PM Subject: Re: [galaxy-dev] Workflow Execution Files To: Aysam Guerler Awesome thanks Aysam! I was wondering if you know what happens to

[galaxy-dev] Galaxy Pulsar unable to access DRMAA so

Hi all, When trying to submit a job to the cluster via Pulsar from Galaxy, an error is thrown and the job won’t be submitted. The paster.log file has the following error: Exception: Attempt to use DRMAA, but DRMAA Python library cannot be loaded. OSError - problem loading shared library

Re: [galaxy-dev] upload data error

Hi Gildas, Thanks for the reply! Actually we are only using this as a local instance, so there isn't any remote server. :-) Cheers, Rui On Mon, Oct 24, 2016 at 3:17 AM, Gildas Le Corguillé < lecorgui...@sb-roscoff.fr> wrote: > Hi > > Do you set some remote destination in the job_conf.xml like

[galaxy-dev] conda management of tools dependent on python3

Dear all, I'm still pretty new to conda tool dependencies management and there is one thing I cannot find documented anywhere: How can I let conda manage tool dependencies that involve python3? If I let Galaxy install conda for me, it creates an environment with python2, then if there is a

Re: [galaxy-dev] Workflow Execution Files

Hi Katherine, The tool form is build and submitted to the API through tool-form-composite.js. Sam On Mon, Oct 24, 2016 at 9:29 AM, Katherine Beaulieu < katherine.beaulieu...@gmail.com> wrote: > Hi Everyone, > Does anyone know what files workflow execution goes through? I had assumed > it just

[galaxy-dev] Workflow Execution Files

Hi Everyone, Does anyone know what files workflow execution goes through? I had assumed it just went through the same files as individual jobs for each step but I don't think that's the case. I was looking at tool-form.js but it doesn't seem to be executing that file. Thanks! Katherine

Re: [galaxy-dev] Tool needs a particular file extension -- now Datatype help

Hi Steve, Galaxy try to sniff the data to guess the appropriate datatype. For Binaries, if any datatype (sniffer) is found from https://github.com/galaxyproject/galaxy/blob/dev/lib/galaxy/datatypes/binary.py ,