Re: [galaxy-dev] Request more details from Nikolaos Tur about pyBamTools & pyBamParser dependency packages message

Hi all, These packages should now install correctly from the toolshed with Peter’s PR. Please let me know if you encounter additional issues. Thanks for using Galaxy, Dan > On Jan 31, 2017, at 10:47 PM, Jennifer Hsieh wrote: > > Thank so much! > This is exactly what I needed. > What a gem

Re: [galaxy-dev] Question about Data Managers

Hi Carlos, You’ll want to set 'galaxy_data_manager_data_path' in your galaxy.ini file. Thanks for using Galaxy, Dan > On Dec 21, 2016, at 3:17 PM, Carlos Lijeron wrote: > > Everyone, > > I’m trying to setup various data managers to automatically download and index > reference indices. H

[galaxy-dev] Ampliocn Sequencing

Dear Galaxy Community, I am a Ph.D. student working on Plasmodium Genome. My project mainly focuses on short Amplicon sequence using Miseq platform and I have a total of 200 primers designed for targeted 200 loci on 14 chromosomes. I would like to ask you which pipeline would be better to do

[galaxy-dev] Configuring Galaxy, Pulsar and Conda

Hi, I'm tryng to configure a Pulsar server to resolve dependencies using Conda but unfortunately it does not work. When I try to execute, for example, bowtie2, the standard error in the Galaxy machine says: "/home/galaxy/pulsar/files/staging/67/command.sh: line 60: bowtie2-build: command not fo