Re: [galaxy-dev] Last stable galaxy Release 16.10 or 17.01 ?

2017-02-17 Thread NGS & Bioinformatics Platform
Thank you Martin for this fast and complete answer. Best regards. From: Martin Čech [mailto:mar...@bx.psu.edu] Sent: 17 February 2017 16:56 To: NGS & Bioinformatics Platform; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Last stable galaxy Release 16.10 or 17.01 ? Hello, 16.10 i

[galaxy-dev] Problem with dataset_permissions and roles

2017-02-17 Thread Lemley, Rob
Hi all, This may or may not be an actual problem, it's just something we ran into on our Galaxy instance in the past few days. The symptom was that when a user clicked the "Edit attributes" button on an item in their history, they would get an "Internal server error" message. After that their

Re: [galaxy-dev] regarding tool dependencies

2017-02-17 Thread Martin Čech
Hi Nir, there is very well maintained Docker image with fully configured Galaxy available here: http://bgruening.github.io/docker-galaxy-stable/ The documentation for Galaxy administration is linked from here: https://new.galaxyproject.org/docs/#administration - most notably the recent slide deck

Re: [galaxy-dev] Last stable galaxy Release 16.10 or 17.01 ?

2017-02-17 Thread Martin Čech
Hello, 16.10 is the latest release however release of 17.01 is imminent and will probably happen early next week. The release_17.01 branch is what usegalaxy.org runs for the past few weeks without any big issues. The choice is yours but updating to release_17.01 now is alright I think as along as

[galaxy-dev] Last stable galaxy Release 16.10 or 17.01 ?

2017-02-17 Thread NGS & Bioinformatics Platform
Dear galaxy-dev list members, Can somebody tell us, which version of galaxy is the last official stable release ? 16.10 branch has been merge with master but not the 17.01. Additionally this 17.01 branch seems to have a lot of recent commit, is it normal ? Is it safe to update our local gala

Re: [galaxy-dev] ImportError and Project life cycle

2017-02-17 Thread Matthias Bernt
Hi Martin, First of all: Since I have upgraded from 16.10 to 17.10 the problem disappeared :) I did uncheck the checkbox for TS dependencies during the tool installation. I was wondering that galaxy_sequence_utils is not shown as installed in "Manage installed tools". It seems to make no diff