Re: [galaxy-dev] the future of trackster - was: galaxy-dev Digest, Vol 136, Issue 8

On 10/17/2017 05:02 PM, Matthias Enders wrote: Hi Hans, your right, I´ve checked this. The utils are free and the folder on GITHub contains the tools needed. Perhaps it´s an idea to change the link on the website (https://galaxyproject.org/visualization-setup/) from here ("http://hgdownload

Re: [galaxy-dev] Problems with the test tool shed?

Done, seems up now. Thanks for the report. M. On Tue, Oct 17, 2017 at 2:22 PM Von Kuster, Greg wrote: > Hi all, > > I’m wondering if the TTS can be restarted. I’ve been seeing this > of-and-on all afternoon. > > Thanks! > > Galaxy > The Test Tool Shed could not be

[galaxy-dev] Problems with the test tool shed?

Hi all, I’m wondering if the TTS can be restarted. I’ve been seeing this of-and-on all afternoon. Thanks! Galaxy The Test Tool Shed could not be reached You are seeing this message because a request to The Test Tool Shed timed out or was refused. This may be a tem

Re: [galaxy-dev] the future of trackster - was: galaxy-dev Digest, Vol 136, Issue 8

According to the website, only UCSC Genome Browser and Blat require a commercial license. Cheers, Nicola On 17/10/17 15:50, Hans-Rudolf Hotz wrote: Hi Matthias No, the twobit-files are not mandatory for trackster. They are only required if you want to zoom into the nucleotide level. Also,

Re: [galaxy-dev] the future of trackster - was: galaxy-dev Digest, Vol 136, Issue 8

Hi Hans, your right, I´ve checked this. The utils are free and the folder on GITHub contains the tools needed. Perhaps it´s an idea to change the link on the website (https://galaxyproject.org/visualization-setup/) from here ("http://hgdownload.cse.ucsc.edu/admin/exe/";) to github? ("https://gi

Re: [galaxy-dev] the future of trackster - was: galaxy-dev Digest, Vol 136, Issue 8

Hi Matthias No, the twobit-files are not mandatory for trackster. They are only required if you want to zoom into the nucleotide level. Also, though, I am not sure, and I recommend to check this with your legal department, but I have been under the impression that the tool 'faToTwoBit' can b

Re: [galaxy-dev] the future of trackster - was: galaxy-dev Digest, Vol 136, Issue 8

Hi Hans, actually we are a company and the UCSC Genome Browser is not freely available for us. As you pinpointed me to the website: https://galaxyproject.org/visualization-setup/ There is an link to USCS utilities (for creating twobitfiles) (http://hgdownload.cse.ucsc.edu/admin/exe/) Actually

[galaxy-dev] the future of trackster - was: galaxy-dev Digest, Vol 136, Issue 8

Hi Matthias We had a Birds of a Feather session about (the future of) Trackster at the recent galaxy community conference in Montpellier. Though, as far as I know (I might be wrong), this didn't result in any no active development on the Trackster code. What kind of functionality do you miss

Re: [galaxy-dev] error despite success

Hi Matthias, any chance https://github.com/galaxyproject/galaxy/pull/4644 would fix this for you ? Best, Marius On 16 October 2017 at 20:12, Matthias Bernt wrote: > Dear list, > > today I got an erroneous result (red) despite the output of the tool to be > seems fine. Seemingly there was an er