Re: [galaxy-dev] Externalizing Galaxy config in docker-galaxy-stable

/welcome in docker-galaxy-stable? Cheers, Brian -- Brian Claywell | programmer/analyst Matsen Group | http://matsen.fredhutch.org http://matsen.fhcrc.org/ Fred Hutchinson Cancer Research Center ___ Please keep all replies on the list

[galaxy-dev] Tool failure due to PYTHONPATH in job environment after upgrade to 15.03

necessary. Can anyone shed some light on what changed? Cheers, Brian -- Brian Claywell | programmer/analyst Matsen Group | http://matsen.fredhutch.org http://matsen.fhcrc.org/ Fred Hutchinson Cancer Research Center ___ Please keep all

[galaxy-dev] Adding a dataset to a dataset list breaks Run this job again

no difference. However, if I copy this dataset to a new history and click Run this job again, no error occurs and the proper tool form appears. If I then add the dataset in the new history to a dataset list, the error reappears. Cheers, Brian -- Brian Claywell | programmer/analyst Matsen Group

Re: [galaxy-dev] Strange repository dependency behavior with toolshed-installed naive_variant_caller

could you please try re-installing the tools again? thank you Martin On Tue, Feb 24, 2015 at 5:15 PM Brian Claywell bclay...@fredhutch.org wrote: Hi Martin, Thanks for the prompt reply! My responses are inline below. On Tue, Feb 24, 2015 at 8:26 AM, Martin Čech mar...@bx.psu.edu wrote

Re: [galaxy-dev] S3/Swift object store cache path and `extra_dir`s

definitely on the right track here. I'll see if I can verify and fix the file location issues you point out and will get back to you. -Dannon On Mon Feb 09 2015 at 4:29:35 PM Brian Claywell bclay...@fredhutch.org wrote: Our local instance currently uses the traditional directories under