Re: [galaxy-dev] Active Directory Authentication question

2017-11-13 Thread Hakeem Almabrazi
nv/lib/python2.7/site-packages/ldap/functions.py", line 66, in _ldap_function_call result = func(*args,**kwargs) LDAPError: (2, 'No such file or directory') galaxy.auth DEBUG 2017-11-13 14:55:50,931 Email: , Username , stopping due to failed non-continue Hakeem Almabrazi Senior Software Arch

Re: [galaxy-dev] Active Directory Authentication question

2017-11-12 Thread Hakeem Almabrazi
ocaldb true I will appreciate it if you think the file looks okay to you. Thank you Hakeem Almabrazi Senior Software Architect Sidra Medical and Research Center Out-Patient Clinic PO Box 26999 , Al Luqta Street Education City North Campus Qatar Foundation Tel:+974-4003-745

[galaxy-dev] Active Directory Authentication question

2017-11-09 Thread Hakeem Almabrazi
Hello, I have installed the latest galaxy and I would like to use the MS Active Directory 2012 for authentication. I tried to follow the instructions outlined here https://galaxyproject.org/admin/config/external-user-auth/ without touching the lib/galaxy/auth/providers/ldap_ad_py since I

Re: [galaxy-dev] FastQC galaxy issue

2015-09-14 Thread Hakeem Almabrazi
Hi, I think it can. I tried it from command line and it worked. -Original Message- From: Björn Grüning [mailto:bjoern.gruen...@gmail.com] Sent: Saturday, September 12, 2015 11:19 AM To: Hakeem Almabrazi; Bjoern Gruening; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev

Re: [galaxy-dev] FastQC galaxy issue

2015-09-11 Thread Hakeem Almabrazi
irm what I am seeing? It is very important to us that we link the fastq files instead of copying them into galaxy. I appreciate any feedback. Regards, Hakeem From: galaxy-dev [mailto:galaxy-dev-boun...@lists.galaxyproject.org] On Behalf Of Hakeem Almabrazi Sent: Thursday, September 10, 2015

Re: [galaxy-dev] loading with Auto detect and fastqsanger options issue!

2015-09-06 Thread Hakeem Almabrazi
: Saturday, September 05, 2015 12:31 PM To: Hakeem Almabrazi Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] loading with Auto detect and fastqsanger options issue! Hi Hak, I noticed the same thing when linking them when adding fastq.gz files as a data library. The auto detect

[galaxy-dev] loading with Auto detect and fastqsanger options issue!

2015-09-04 Thread Hakeem Almabrazi
Hi, I have installed Galaxy as cluster in my local env. I have few fastq.gz files in my file system that I want to link them to galaxy instead of loading them. When I select "Auto Detect" during the loading I noticed two things. First, it is taking way longer to link the files with the

[galaxy-dev] Sample Tracking Feature in Galaxy

2015-08-04 Thread Hakeem Almabrazi
Hi, I am trying to see if we can use Tracking Sample Features in Galaxy to collect some data from the technisians. However, I have no idea where to start. I guess I do not know how to set it up in Galaxy. Here is what I have done so far. From the admin panel, I create two forms; Sequencing