[galaxy-dev] Cannot import or download workflow

Hi, I'm running the bgruening/galaxy-stable docker image. After making some changes to the tools, I can no longer upload workflows. How do I debug? What I get from the server is Internal Server Error Galaxy was unable to successfully complete your request An error occurred. This may be an interm

Re: [galaxy-dev] concatenate_datasets docker image can't create output

to help ensure the resulting files have the correct > permissions (especially when sudo is disabled - which it seems it is > in your configuration). > > Hope this helps, > > -John > > > > On Mon, Jan 26, 2015 at 7:02 PM, Jeltje van Baren > wrote: > > Our sysadmin jus

Re: [galaxy-dev] concatenate_datasets docker image can't create output

text files so that's not it) On Mon, Jan 26, 2015 at 11:47 AM, Jeltje van Baren < jeltje.van.ba...@gmail.com> wrote: > See attached for screenshot! > > Thanks for the links. > > > > On Mon, Jan 26, 2015 at 11:37 AM, John Chilton > wrote: > >> Ca

Re: [galaxy-dev] concatenate_datasets docker image can't create output

; job_conf.xml lists the directories that get passed as variables - again, > > when and where are those defined? > > > > Thanks, > > > > -Jeltje > > > > > > On Fri, Jan 23, 2015 at 1:35 PM, Jeltje van Baren > > wrote: > >> >

Re: [galaxy-dev] concatenate_datasets docker image can't create output

t I can't find where that's happening - container.sh isn't listed in any file under galaxy-dist. job_conf.xml lists the directories that get passed as variables - again, when and where are those defined? Thanks, -Jeltje On Fri, Jan 23, 2015 at 1:35 PM, Jeltje van Baren < jeltje.

Re: [galaxy-dev] concatenate_datasets docker image can't create output

t; -John > > On Fri, Jan 23, 2015 at 2:37 PM, Jeltje van Baren > wrote: > > Hi, > > > > I'm following instructions at > > https://github.com/apetkau/galaxy-hackathon-2014. > > > > When I try to run the concatenate-datasets on two input files, two o

[galaxy-dev] concatenate_datasets docker image can't create output

Hi, I'm following instructions at https://github.com/apetkau/galaxy-hackathon-2014. When I try to run the concatenate-datasets on two input files, two odd things happen. First, TWO nearly identical commands are generated in the History panel, only differing in their output filename. In paster.log

[galaxy-dev] Getting 'No space left on device' at testtoolshed

hanks! -Jeltje van Baren Internal Server Error Galaxy was unable to successfully complete your request URL: http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=2e4420df6d37d181 Module galaxy.web.framework.middleware.error:*149* in __call__ >> <https://testtoolshed.g2.bx.psu.edu

Re: [galaxy-dev] How to test my functional tests?

Thanks for the quick responses John and Peter! I feel fortified to carry on. -Jeltje On Wed, Jan 7, 2015 at 9:03 PM, Peter Cock wrote: > On Thu, Jan 8, 2015 at 3:27 AM, Jeltje van Baren > wrote: > > Hi, > > > > I'm trying to find out what the best way is to see if

[galaxy-dev] How to test my functional tests?

Hi, I'm trying to find out what the best way is to see if my functional tests work as expected, and I'm also wondering when these tests are (supposed to be) run. Here are the details: Following instructions at https://wiki.galaxyproject.org/Admin/Tools/AddToolTutorial, I created a little toolExam