[galaxy-dev] Re: pbs_python + python 3 issue

2020-11-09 Thread Peter Cock via galaxy-dev
From the syntax I can see pbs-python still uses a Python 2 style print, it will need updating for Python 3. I suggest opening an issue on the repository, and seeing what the author says. I would guess the Python 2 to 3 changes will be fairly easy, but worry that there have been other changes to Ga

[galaxy-dev] Re: How to include a large datafile in a bioconda package?

2019-07-24 Thread Peter Cock via galaxy-dev
That seems a good compromise within conda, since BioConda wouldn't want the binary package itself to be too big. (I'm doing something similar with some real sample data for a tool, putting it up on Zenodo. Of course, this is optional for my tool - your use case is different.) The Galaxy Data Mana

[galaxy-dev] Re: Share Docker Volumes when integrating Containers in Galaxy

2019-05-20 Thread Peter Cock via galaxy-dev
I don't have any advise from the BLAST DB side, but I would expect the same solution to work with any *.loc file and the file system it points at. Peter On Mon, May 20, 2019 at 10:50 AM Schäfer, Richard wrote: > > Hello, > > I want to integrate a Docker container as a tool in Galaxy. This works