ek
wrote:
> Hi Rui,
>
> there's a fairly complete explanation and example in in
> https://docs.galaxyproject.org/en/latest/admin/special_topics/ftp.html
>
> Hope that helps,
> Marius
>
> On Mon, 28 Jan 2019 at 07:35, Rui Wang wrote:
>
>> Hey Folks,
>
Hey Folks,
I tried a few times with different configurations, but none worked. Did
anyone have the successful experience that could share? :-)
Cheers,
Rui
On Sat, Jan 19, 2019 at 1:43 PM Rui Wang wrote:
> Hey Folks,
>
> I'm looking at the instructions of using ftp with proft
Hey Folks,
I'm looking at the instructions of using ftp with proftpd. There is a
section talking about extending it to use sftp. However, the sample config
isn't comprehensive. I'm wondering if anyone has a working config for
reference?
What's the setting of user and group? It says it should matc
Hi Folks,
I tried to install some tools into the galaxy kickstart, and had the
following issues:
1. Tons of warnings were generated:
[WARNING]: sftp transfer mechanism failed on [localhost]. Use
ANSIBLE_DEBUG=1 to see detailed information
2. I wasn't able to install the data manager or tools.
Hi Folks,
I spent sometime playing with the kickstart, and sort of got it working.
Still a couple things not clear:
1. Is it true that there is no start/stop? My guess is that whenever you
need to restart, just re-run the playbook? Anything you want to update(for
example add new tools), you re-ru
work?
Thanks,
Rui
On Fri, Oct 12, 2018 at 8:10 PM Rui Wang wrote:
> Hi Folks,
>
> So I managed to ran through the ansible. What I did was to remove certain
> steps. For example, I don't need slurm-drmaa and docker, then I skipped the
> update cache. After these minor
Hi Folks,
So I managed to ran through the ansible. What I did was to remove certain
steps. For example, I don't need slurm-drmaa and docker, then I skipped the
update cache. After these minor changes, it finished successfully(?) with
an error message it ignored. Then I tried to access the UI, but
fatal: [localhost]: FAILED! => {"changed": false, "failed": true, "msg":
"Failed to update apt cache."}
Have you seen this before? If you do, please give me a hand. :)
Thanks,
Rui
On Fri, Oct 12, 2018 at 2:17 PM Rui Wang wrote:
> Hi Qiang,
>
*From:* galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf
> of Rui Wang [ruiwang...@gmail.com]
> *Sent:* Wednesday, October 10, 2018 9:30 PM
> *To:* galaxy-dev@lists.galaxyproject.org
> *Subject:* Re: [galaxy-dev] can't create user on a new instance
>
> Hi Folk
ault.
>> Good luck!
>>
>> Thanks,
>>
>> -Qiang
>>
>> --
>> *From:* galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on
>> behalf of Rui Wang [ruiwang...@gmail.com]
>> *Sent:* Wednesday, October 10, 20
mes with it by default.
> Good luck!
>
> Thanks,
>
> -Qiang
>
> --
> *From:* galaxy-dev [galaxy-dev-boun...@lists.galaxyproject.org] on behalf
> of Rui Wang [ruiwang...@gmail.com]
> *Sent:* Wednesday, October 10, 2018 9:30 PM
> *To:* galaxy-dev@lis
Hi Folks,
I still could not create new user account with the same error message. Has
anyone happened to see this before?
Cheers,
Rui
On Tue, Oct 9, 2018 at 5:48 PM Rui Wang wrote:
> Hey Folks,
>
> I just installed a new 18.05 instance with a new postgresql db created.
> How
Hey Folks,
I just installed a new 18.05 instance with a new postgresql db created.
However, the UI doesn't allow me to create any user. After I provided all
input information, it says
galaxy.web.framework.webapp WARNING 2018-10-09 17:28:35,735
[p:32925,w:1,m:0] [uWSGIWorker1Core2] Wrong session t
Hi Folks,
I found one problem with the docker galaxy instance we have. While we are
trying to run Diffbind tool, it failed to create the env for the tool. The
error is
Conda dependency seemingly installed but failed to build job environment.
I saw the env is defined in envs/__bioconductor-diffb
ll be greatly appreciated.
Thanks,
Rui
On Tue, Jun 20, 2017 at 8:11 AM, Rui Wang wrote:
> Hi Folks,
>
> I got the galaxy docker image and played with it. However, I keep getting
> this when I use dexseq:
>
> Fatal error: Exit code 1 ()
> Could not import pysam, which is neede
Hi Folks,
I got the galaxy docker image and played with it. However, I keep getting
this when I use dexseq:
Fatal error: Exit code 1 ()
Could not import pysam, which is needed to process BAM file (though
not to process text SAM files). Please install the 'pysam' library from
https://code.google.c
?
>
> AuthPAM off
>
> #Within the
> TLSProtocol TLSv1
>
Do we really have to specify TLS, or we don't need that?
Cheers,
Rui
>
> I suppose you can specify tls 1.1 or 1.2 here, but never really tried it.
>
> In my setup I also commente
Hi Folks,
I'm trying to set up the ftp for the local galaxy instance. I got the
regular ftp working, but not the sftp. After a few hours attempts, I'm
wondering what I'm missing. Here is the related info:
1. Configure the build
install_user=bioinfoadmin install_group=bioinfoadmin ./configure
--p
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