[galaxy-dev] Re: FTP Local instance: ECONNREFUSED

2020-04-30 Thread Youssef GHORBAL
o investigate further SyslogLevel DEBUG Maybe you should give it a try. Youssef Ghorbal Institut Pasteur --- > On 30 Apr 2020, at 17:45, Luc Cornet wrote: > > Hi, > > I am struggling with the FTP connection on our local instance. > >

[galaxy-dev] Re: SAML Authentication

2020-03-07 Thread Youssef GHORBAL
ML" in the same sentence are not permitted) At Pasteur we reverted back to Galaxy builtin auth even for internal users. In any case, if you got something working I'd be more than happy to test it. Youssef Ghorbal Institut Pasteur --- > On 7 Mar 20

Re: [galaxy-dev] Using soft-links to NFS-shares as user directories

2018-11-27 Thread Youssef GHORBAL
he symlinks and see how it goes. You may also check that the Galaxy service is actually running under the intended identity (gal...@ad.dkfz-heidelberg.de<mailto:gal...@ad.dkfz-heidelberg.de>) Youssef Ghorbal IIS / DSI Institut Pasteur - On 27 Nov 2018, at 11:43

Re: [galaxy-dev] Using soft-links to NFS-shares as user directories

2018-11-26 Thread Youssef GHORBAL
eck the target permissions (/galaxy-clients/w190_galaxy/ for instance) Youssef Ghorbal IIS / DSI Institut Pasteur --- On 26 Nov 2018, at 15:23, Previti mailto:christopher.prev...@dkfz-heidelberg.de>> wrote: Dear all, We implemented a system using soft-links to link us

Re: [galaxy-dev] FTP service for galaxy with external authentication via SAML using shibboleth

2018-04-17 Thread Youssef GHORBAL
h SAML auth, HTML5 and resuming support) : http://www.resumablejs.com https://tus.io (and even in this situation, it will be difficult to handle CLI based upload workflows) Youssef Ghorbal Institut Pasteur ___ Please keep all replies on the list by us

Re: [galaxy-dev] galaxy behind firewall

2017-09-18 Thread Youssef GHORBAL
Hello, > On 18 Sep 2017, at 16:49, Matthias Bernt wrote: > > Dear list, > > our galaxy is behind a firewall which seems to imply that many of the nice > possibilities to use online services which download data from galaxy do not > work, e.g. phinch or the UCSC browser. > > Has anybody ideas

Re: [galaxy-dev] AD Intergration

2017-06-12 Thread Youssef GHORBAL
Hello, >From my experience, By default, Active Directory does not allow bind operation >over plain LDAP, you need LDAPS for that to happen. My 2 cents. Youssef Ghorbal On 9 Jun 2017, at 15:29, John Chen mailto:jchen...@yahoo.com>> wrote: Hans-R

Re: [galaxy-dev] Changing Tool Shed URL

2016-10-21 Thread Youssef GHORBAL
Hello, Two other tables need to be adapated (they reference tool_id) Table “job" and table “workflow_step” Youssef Ghorbal Institut Pasteur - > On 21 Oct 2016, at 00:36, Youssef Ghorbal wrote: > > Hello, > > What worked fo

Re: [galaxy-dev] Changing Tool Shed URL

2016-10-20 Thread Youssef GHORBAL
e the directory from the old prefix to the new prefix (care to adapt the subdirectories too : ./mytoolshed.url/xxx => ./mytoolshed2.url/) - start Galaxy (and cross your fingers) Hope this help ! Youssef Ghorbal Institut Pasteur - > On 20 Oct 2016, at 00:

[galaxy-dev] Changing Tool Shed URL

2016-10-19 Thread Youssef GHORBAL
the shed_tool_conf.xml apdapting the guids and the items with no luck. Can someone point me to the right direction ? How the matching is done between shed_tool_conf.xml entries, the tool_version and tool_shed_repository tables. Thank you for your help. Youssef Ghorbal Institut