Hi Dev,
I am running a local instance Galaxy for developing a variant calling
pipeline. I ran into this issue after configuring and installing GATK2 on
my local when running the GATK *Realigner Target Creator on the BAM file
generated by Mark duplicates.*
*Can some suggest how to resolve this issu
Hi,
can you please check the exact version of the GATK jar file?
Currently, only 2.8 is supported. We stopped maintaining it, due to
licensing issues - which might be resolved in a 4.0 version.
If you have GATK2.8, it should work hopefully.
Cheers,
Bjoern
Am 31.05.2017 um 05:36 schrieb OLABODE O
Hi,
which version of GATK are you using? From your email it seems you may be
using GATK3, which is not supported by the Galaxy GATK2 wrappers.
Cheers,
Nicola
On 31/05/17 04:36, OLABODE OLUWASEUN AJAYI wrote:
Hi Dev,
I am running a local instance Galaxy for developing a variant calling
pipel