Thank you very much for sharing Youssef. Very helpful.
Martin
On Fri, Oct 21, 2016 at 10:20 AM Youssef GHORBAL
wrote:
> Hello,
>
> Two other tables need to be adapated (they reference tool_id)
> Table “job" and table “workflow_step”
>
> Youssef Ghorbal
> Institut Pasteur
> -
Hello,
Two other tables need to be adapated (they reference tool_id)
Table “job" and table “workflow_step”
Youssef Ghorbal
Institut Pasteur
-
> On 21 Oct 2016, at 00:36, Youssef Ghorbal wrote:
>
> Hello,
>
> What worked for us was this action sequenc
Hello,
What worked for us was this action sequence :
- stop Galaxy
- update config/tool_sheds_file.xml (change the URL from the old one to
the new one)
- “sed” shed_tool_conf.xml to change the “guid", the tool_shed and the
“file” to replace the old prefix
This wouldn’t be a transfer, you would uninstall the tools coming from the
old toolshed and re-install them form the new toolshed.
This is only possible if these tools are available from the second toolshed.
To illustrate the procedure, this is what you would do if you would take
all tools from us
Hello Marius,
Thank you for your answer.
Are you sure that ephemeris can transfer tool from toolshed1 to
toolshed2 ? We read that it was only implemented to install tools from a
toolshed on a Galaxy.
We will try the second solution and as we already tried to manipulate
the database, we ston
Hi Youssef,
the tool shed url is also stored in the database, that's why just changing
the shed_tool_conf.xml is not working. I think you have a bunch of options
here:
1: You can make a list of tools from that toolshed and re-install them from
the new toolshed.
https://pypi.python.org/pypi/ephemer
Hello,
I’m wondering if there is any way to change an established Tool Shed
URL.
I have a Galaxy instance and a Tool Shed instance
(http://mytoolshed.url/xxx) A lot of tools have beed installed from that Tool
Shed inside Galaxy (tools referenced inside workflows etc)
I w