[galaxy-dev] jupyter notebook / nginx / ssl

2017-05-30 Thread cristel thomas
Hi Galaxy developers, we are trying to get notebooks to run on our production server, with half success: we can get jupyter to load, and it does access the history, but notebooks uploaded to history do not load, and any modification to the notebook provided can be saved but do not show up when the

[galaxy-dev] jupyter + apache proxy + SSL

2016-07-19 Thread Nikolay Aleksandrov Vazov
Hi, I am trying to set up galaxy server with IE jupyter with apache proxy and SSL enbled. Does anybody have a similar setup? I am using == galaxy.ini dynamic_proxy_manage=False ('True' gives the same error) dynamic_proxy=node dynamic_proxy_session_map=database/session_map.sqlite #dynamic_pr

Re: [galaxy-dev] Jupyter

2016-02-10 Thread Björn Grüning
If fixed this in the container, builds are triggered, so hopefully in a few hour you can pull the new image and this is working for you! Thanks for reporting! Bjoern > Thanks, almost worked… > > get --id 78 > bash: /home/jovyan/py/get: Permission denied > > I assume the jovyan is a docker user?

Re: [galaxy-dev] Jupyter

2016-02-10 Thread Jasper Koehorst
Thanks, almost worked… get --id 78 bash: /home/jovyan/py/get: Permission denied I assume the jovyan is a docker user? On 10/02/16 15:36, "Björn Grüning" wrote: > > >Am 10.02.2016 um 15:25 schrieb Jasper Koehorst: >> I am currently experimenting with jupyter and it finally works as I am >>

Re: [galaxy-dev] Jupyter

2016-02-10 Thread Björn Grüning
Am 10.02.2016 um 15:25 schrieb Jasper Koehorst: > I am currently experimenting with jupyter and it finally works as I am > able to use the environment on a local machine. > However beside python2.7 how do I load a galaxy history file into for > example R, Bash, etc? I could not really find any do

[galaxy-dev] Jupyter

2016-02-10 Thread Jasper Koehorst
I am currently experimenting with jupyter and it finally works as I am able to use the environment on a local machine. However beside python2.7 how do I load a galaxy history file into for example R, Bash, etc? I could not really find any documentation on these languages beside python 2.7. Is th