Re: [galaxy-dev] Missing modules after upgrade to 16.01

2016-03-01 Thread Nate Coraor
o importance where I keep it? > > Thanks again! > Cristian > > > Subject: Re: [galaxy-dev] Missing modules after upgrade to 16.01 > > To: tuto...@hotmail.com; galaxy-dev@lists.galaxyproject.org > > From: bjoern.gruen...@gmail.com > > Date: Tue, 1 Mar 2016 13:

Re: [galaxy-dev] Missing modules after upgrade to 16.01

2016-03-01 Thread C. Ch.
ember... Probably to separate the venv from the galaxy installation. For the future, is it better to change my venv to reside in the galaxy folder or is it of no importance where I keep it? Thanks again!Cristian > Subject: Re: [galaxy-dev] Missing modules after upgrade to 16.01 > To: tuto...@hotmail.

Re: [galaxy-dev] Missing modules after upgrade to 16.01

2016-03-01 Thread Björn Grüning
Hi, please have a look at this script and run it: ./scripts/common_startup.sh Also make sure you have samtools installed. Ciao, Bjoern Am 01.03.2016 um 13:39 schrieb C. Ch.: > Hi, > > I've upgraded to 16.01 and have error messages indicating missing > modules. This produces problems while set

[galaxy-dev] Missing modules after upgrade to 16.01

2016-03-01 Thread C. Ch.
Hi, I've upgraded to 16.01 and have error messages indicating missing modules. This produces problems while setting the metadata. The processes run, the results are there but the history entry is in red. How can I trigger the installation of all the modules that galaxy needs with the new pip bas