Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-27 Thread Tiago Antao
Hi, I have now drafted the issue: https://github.com/galaxyproject/tools-iuc/issues/422 Comments/feedback most appreciated... ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-25 Thread mabernard
Hi, 7th and 8th would be great for me. But I agree with Björn, a github issue to share our ideas and a doodle is a better way to fixe it. Have a nice day Maria Björn Grüning a écrit : Am 24.11.2015 um 20:36 schrieb Tiago Antao: On Tue, 24 Nov 2015 10:38:05 +0100 mabernard wrote: So I'm

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-25 Thread mabernard
Sorry, I answer too quickly. 2 days are a good duration, not too short and easy to schedule. M mabernard a écrit : Hi, 7th and 8th would be great for me. But I agree with Björn, a github issue to share our ideas and a doodle is a better way to fixe it. Have a nice day Maria Björn Grünin

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-25 Thread Tiago Antao
Hi, The doodle is available here: http://doodle.com/poll/hcc83a4yzgnecq4w The issue will be out soon... On Wed, 25 Nov 2015 09:05:23 +0100 mabernard wrote: > Hi, > > 7th and 8th would be great for me. But I agree with Björn, a github > issue to share our ideas and a doodle is a better way

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Björn Grüning
Am 24.11.2015 um 21:02 schrieb Tiago Antao: >> What about a github issue and a doodle link? > > I want to contact a couple of people before the github issue. That will > be ready tomorrow. > > WRT doodle, a question: do you folks think 2 days is the correct > duration? I do not have an opinion

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Tiago Antao
> What about a github issue and a doodle link? I want to contact a couple of people before the github issue. That will be ready tomorrow. WRT doodle, a question: do you folks think 2 days is the correct duration? I do not have an opinion myself, but is that a sensible default (as the metagenomics

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Björn Grüning
Am 24.11.2015 um 20:36 schrieb Tiago Antao: > On Tue, 24 Nov 2015 10:38:05 +0100 > mabernard wrote: > >> So I'm in to but not at the date you propose sorry. >> Is the possible the week before (between 7th and 11th) or 2 weeks >> later (between 29th to 1st)? > > What about the 7th and

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Tiago Antao
On Tue, 24 Nov 2015 10:38:05 +0100 mabernard wrote: > So I'm in to but not at the date you propose sorry. > Is the possible the week before (between 7th and 11th) or 2 weeks > later (between 29th to 1st)? What about the 7th and 8th (March)? Is this OK for everybody? Thanks, Tiago __

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread mabernard
Dear all, I work on many RADSeq projects, and I'm using Stacks for doing this. I developpe(d) some scripts to describe the result, compute descriptive statistics So I'm really interested to participate to this Hackathon, to give autonomy to biologist. So I'm in to but not at the date

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Gildas Le Corguillé
The same for me, I have another Hackathon ^^' the 14-16th of march. Anyway, I can take part through the GitHUB. Gildas Le 24/11/2015 10:38, mabernard a écrit : Dear all, I work on many RADSeq projects, and I'm using Stacks for doing this. I developpe(d) some scripts to describe the result,

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-24 Thread Gildas Le Corguillé
Hi All, I have some knowledges about RADSeq ... at least about the bioinformatics part. This technology is growing up in my lab (marine science) and I'm involve in few of those projects. So I'm in! Gildas Le 23/11/2015 20:59, Tiago Antao a écrit : On Mon, 23 Nov 2015 18:03:05 + John

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Björn Grüning
Am 23.11.2015 um 20:51 schrieb Tiago Antao: > On Mon, 23 Nov 2015 18:55:22 +0100 (CET) > Yvan Le Bras wrote: > > >> So ready to go further with a remote hackathon. Maybe on March or >> April 2016 ? > > What about, tentatively, 14 and 15 of March? That is a Monday and a > Tuesday... Sounds go

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Björn Grüning
Am 23.11.2015 um 20:56 schrieb Tiago Antao: > On Mon, 23 Nov 2015 12:08:17 -0600 > Eric Rasche wrote: > >> Maybe you all would consider doing something akin to Marten's mention >> of the Jenkins hackathons where they have short (10-30 minute) >> seminars on background information related to the

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Yvan Le Bras
depuis le réseau SFR Message d'origine De : Björn Grüning Date : 23/11/2015 21:28 (GMT+01:00) À : Tiago Antao , Yvan Le Bras Cc : Björn Grüning , galaxy-dev , galaxy-iuc , Anthony Bretaudeau , Gildas Le Corguillé , Maria Objet : Re: [galaxy-dev] Potential Hack

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Tiago Antao
On Mon, 23 Nov 2015 18:03:05 + John Chilton wrote: > Someone should create an tools-iuc issue for this, I will certainly > participate also. I don't know anything RADSeq (or really much about > any kind of Seq) but I suspect I can find a way to help if there is a > TODO or ideas list that is

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Tiago Antao
On Mon, 23 Nov 2015 12:08:17 -0600 Eric Rasche wrote: > Maybe you all would consider doing something akin to Marten's mention > of the Jenkins hackathons where they have short (10-30 minute) > seminars on background information related to the area so that the > more experienced volunteers can bet

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Tiago Antao
On Mon, 23 Nov 2015 18:55:22 +0100 (CET) Yvan Le Bras wrote: > So ready to go further with a remote hackathon. Maybe on March or > April 2016 ? What about, tentatively, 14 and 15 of March? That is a Monday and a Tuesday... ___ Please keep

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Björn Grüning
>> Yvan >> >> - Mail original - >>> De: "Björn Grüning" >>> À: "Tiago Antao" , "galaxy-dev" >>> , "galaxy-iuc" >>> >>> Envoyé: Lundi 23 Novembre 2015 17:52:35 >>> Objet: Re: [gala

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Eric Rasche
on. Maybe on March or > > April 2016 ? > > I will leave this decision to Tiago :) > But this all sounds very interesting! > > Cheers, > Bjoern > > > Wishing you the best. > > > > Cheers, Yvan > > > > - Mail original - > >> De: &

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Björn Grüning
, Yvan > > - Mail original - >> De: "Björn Grüning" À: "Tiago Antao" >> , "galaxy-dev" >> , "galaxy-iuc" >> Envoyé: Lundi 23 Novembre 2015 >> 17:52:35 Objet: Re: [galaxy-dev] Potential Hackathon proposal: >&g

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread John Chilton
l original - >> De: "Björn Grüning" >> À: "Tiago Antao" , "galaxy-dev" >> , "galaxy-iuc" >> >> Envoyé: Lundi 23 Novembre 2015 17:52:35 >> Objet: Re: [galaxy-dev] Potential Hackathon proposal: RADSeq >> >>

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Yvan Le Bras
axy-iuc" > > Envoyé: Lundi 23 Novembre 2015 17:52:35 > Objet: Re: [galaxy-dev] Potential Hackathon proposal: RADSeq > > Hi Tiago, > > I like this idea very much and I will try to help as much as I can. > > I hope someone else will join otherwise I will be in for a

Re: [galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-23 Thread Björn Grüning
Hi Tiago, I like this idea very much and I will try to help as much as I can. I hope someone else will join otherwise I will be in for a tandem hack :) Cheers, Bjoern Am 16.11.2015 um 17:05 schrieb Tiago Antao: > Dear all, > > This is an email to inquire about the potential community interest

[galaxy-dev] Potential Hackathon proposal: RADSeq

2015-11-16 Thread Tiago Antao
Dear all, This is an email to inquire about the potential community interest in having a RADSeq hackathon. There has been quite some interest in analyzing RADSeq with Galaxy. As far as I know there are essentially only two tools dedicated to this, wrapping stacks and prada. I have been exchangin