Re: [galaxy-dev] Problems uploading files to galaxy

2016-03-15 Thread Lemley, Rob
o: John Chilton Cc: Lemley, Rob ; galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Problems uploading files to galaxy On Tue, Mar 15, 2016 at 2:21 PM, John Chilton wrote: > If you are running jobs as "the real user" with drmaa (using the chown > script) - you will pr

Re: [galaxy-dev] Problems uploading files to galaxy

2016-03-15 Thread Lemley, Rob
-Rob Rob Lemley Systems Administrator – CIRC University of Rochester -Original Message- From: John Chilton [mailto:jmchil...@gmail.com] Sent: Tuesday, March 15, 2016 10:21 AM To: Lemley, Rob Cc: galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Problems uploading files to g

Re: [galaxy-dev] Problems uploading files to galaxy

2016-03-15 Thread Peter Cock
On Tue, Mar 15, 2016 at 2:21 PM, John Chilton wrote: > If you are running jobs as "the real user" with drmaa (using the chown > script) - you will probably want to setup a separate job destination > using the local runner for upload jobs. The upload tool uses files > that are created outside of G

Re: [galaxy-dev] Problems uploading files to galaxy

2016-03-15 Thread John Chilton
C > University of Rochester > > -Original Message- > From: galaxy-dev [mailto:galaxy-dev-boun...@lists.galaxyproject.org] On > Behalf Of Lemley, Rob > Sent: Monday, March 7, 2016 2:03 PM > To: galaxy-dev@lists.galaxyproject.org > Subject: [galaxy-dev] Problems uploading

Re: [galaxy-dev] Problems uploading files to galaxy

2016-03-11 Thread Lemley, Rob
g] On Behalf Of Lemley, Rob Sent: Monday, March 7, 2016 2:03 PM To: galaxy-dev@lists.galaxyproject.org Subject: [galaxy-dev] Problems uploading files to galaxy Hi, I'm hoping you can help out with a problem we are experiencing uploading files to our own Galaxy instance. When a user tries t

[galaxy-dev] Problems uploading files to galaxy

2016-03-07 Thread Lemley, Rob
Hi, I'm hoping you can help out with a problem we are experiencing uploading files to our own Galaxy instance. When a user tries to upload a file to Galaxy through their web browser, the job errors out: Traceback (most recent call last): File "/gpfs/fs1/sfw/cibem_galaxy/app/galaxy/tools/data