[galaxy-dev] Re: Error when installing from toolshed

I have to leave so can’t do this now, I will as soon as possible and let you know. Thanks again! > On Jul 31, 2019, at 7:24 PM, Martin Čech wrote: > > This might have something to do with the client build. Could you try running > 'make client` from Galaxy root folder? > > Also what version of

[galaxy-dev] Re: Error when installing from toolshed

This might have something to do with the client build. Could you try running 'make client` from Galaxy root folder? Also what version of Galaxy are you experiencing this on, just 19.01 or did you use different locally? And how are you starting Galaxy? Martin On Wed, Jul 31, 2019 at 1:16 PM Nancy

[galaxy-dev] Re: Error when installing from toolshed

I very much appreciate the offer, but unfortunately I have to leave now. I am at a conference in Florence and tomorrow is our demo at a workshop, so I would be unable to do it tomorrow either, but anytime Friday would work if that is possible. We are now having the same problem on the jetstream

[galaxy-dev] Re: Error when installing from toolshed

Would you like to come to the admin channel so we can troubleshoot this interactively? https://gitter.im/galaxyproject/admins Martin On Wed, Jul 31, 2019 at 12:56 PM Nancy Ide wrote: > Please look at jetstream.lappsgrid.org — this is the development version > I was using. > > When I tried to pu

[galaxy-dev] Re: Error when installing from toolshed

Please look at jetstream.lappsgrid.org — this is the development version I was using. When I tried to pull from github it complained that some of my”untracked” files would be overwritten. I did a git stash but 3 files still were said to be overwritten, and I si

[galaxy-dev] Re: Error when installing from toolshed

I see version 18.09 at http://galaxy.lappsgrid.org/ - are you trying to update this instance to 19.01? Do you have any local changes or issues when pulling new version? On Wed, Jul 31, 2019 at 12:36 PM Nancy Ide wrote: > Hello > > Cookies were enabled—also I was updating from our galaxy instance

[galaxy-dev] Re: Error when installing from toolshed

Hello Cookies were enabled—also I was updating from our galaxy instance for the LAPPS Grid, which is using version 19.01. > On Jul 31, 2019, at 6:34 PM, Martin Čech wrote: > > Hi Nancy, > > what versions of Galaxy did you update from and to? Please check if you have > cookies enabled in your

[galaxy-dev] Re: Error when installing from toolshed

Hi Nancy, what versions of Galaxy did you update from and to? Please check if you have cookies enabled in your browser. Martin On Wed, Jul 31, 2019 at 9:45 AM Nancy Ide wrote: > Hello > > I am suddenly (after pulling a new version of galaxy) unable to install > from the toolshed. The error is:

[galaxy-dev] Re: Error during tool installation: "inotify instance limit reached"

Thank you very much! We have 19.01 running and the parameter that I had to put to "false" was "watch_tools" All the best, Christopher On 7/10/19 12:00 PM, Marius van den Beek wrote: > Hi Christopher, > > you might want to turn off `watch_tools` if you are using it, > this is only needed when us

[galaxy-dev] Re: Error during tool installation: "inotify instance limit reached"

Hi Christopher, you might want to turn off `watch_tools` if you are using it, this is only needed when using the pretty-much undocumented feature where you dump tools into a directory without registering them in any tool_conf.xml file. All other tool reloading happens by another means. Similarly,

[galaxy-dev] Re: Error

PS Same error ("Conda dependency seemingly installed but failed to build job environment.”) running Estimate parameters tool on our Jetstream instance. > On Jul 7, 2019, at 3:06 PM, ide wrote: > > Hi all > > Now that GCC is over I wonder if we could resolve the problem from our > discussion

[galaxy-dev] Re: Error

Hi Pietro, I suspect the package is broken. The anaconda.org server is available, but the libgcc-ng file is not where the package expects it to be. I followed your suggestion and it worked... sort of. At least it exposed another error, actually the same problem but with numpy... So I applied t

[galaxy-dev] Re: Error

Unfortunately still the same error! Trying Pietro’s solution. > On Jun 26, 2019, at 5:57 AM, Björn Grüning wrote: > > Hi Nancy, > > this looks like a timout during a download of conda packages. > > I assume anaconda.org had some hiccups, please try again. Those URLs should > exists. > > Ciao

[galaxy-dev] Re: Error

Hi, probably the package is broken see https://anaconda.org/conda-forge/libgcc-ng/files . Try to install the previous version manually, activating conda and then the conda environment of the tool. commands: source _conda/bin/activate to activate CONDA cd _conda/envs source activate then con

[galaxy-dev] Re: Error

Hi Nancy, this looks like a timout during a download of conda packages. I assume anaconda.org had some hiccups, please try again. Those URLs should exists. Ciao, Bjoern Am 25.06.19 um 22:59 schrieb Nancy Ide: ___ Please keep all replie