Re: [galaxy-dev] Strange repository dependency behavior with toolshed-installed naive_variant_caller

2015-04-15 Thread Brian Claywell
Hi Martin, We haven't upgraded to the March release yet, and I haven't really touched the tools I referred to in my original email since I got them working (despite the duplicate installation records in the admin interface, etc). I've started testing the new release, though, and will take another

Re: [galaxy-dev] Strange repository dependency behavior with toolshed-installed naive_variant_caller

2015-04-13 Thread Martin Čech
Hello Brian, we have made some changes in the past month that might address the issue you are having. Are you still encountering problems? If so could you please try re-installing the tools again? thank you Martin On Tue, Feb 24, 2015 at 5:15 PM Brian Claywell wrote: > Hi Martin, > > Thanks f

Re: [galaxy-dev] Strange repository dependency behavior with toolshed-installed naive_variant_caller

2015-02-24 Thread Brian Claywell
Hi Martin, Thanks for the prompt reply! My responses are inline below. On Tue, Feb 24, 2015 at 8:26 AM, Martin Čech wrote: > Are you using Admin UI for installation or API scripts? > The admin UI exclusively. > Does the 'installed tool shed repos' page show multiple installations of > the sa

Re: [galaxy-dev] Strange repository dependency behavior with toolshed-installed naive_variant_caller

2015-02-24 Thread Martin Čech
Hello Brian, I have just tried to install and uninstall NVC on my development machine multiple times and was not able to replicate the problem. However I have seen similar things before. Let me ask you few questions: Are you using Admin UI for installation or API scripts? Does the 'installed tool

[galaxy-dev] Strange repository dependency behavior with toolshed-installed naive_variant_caller

2015-02-23 Thread Brian Claywell
First, I'm at a bit of a loss to even describe what's going on, so I apologize in advance for a rambling bug report. Please bear with me! The naive_variant_caller tool was failing on our instance with "Failed to resolve dependency" errors on numpy, pyBamParser, and pyBamTools, despite the tool dep