Re: [galaxy-dev] Trimmomatic doesn't recognise pair collection

2016-02-04 Thread Peter Briggs
Hello Peter Glad that you found the problem, thanks for the update. Best wishes Peter On 04/02/16 12:20, Peter van Heusden wrote: Hi Peter We found that it was a problem in the Galaxy code - it was fixed in the some of the patches that went towards the 16.01 release. Thanks, Peter On 4 Fe

Re: [galaxy-dev] Trimmomatic doesn't recognise pair collection

2016-02-04 Thread Peter van Heusden
Hi Peter We found that it was a problem in the Galaxy code - it was fixed in the some of the patches that went towards the 16.01 release. Thanks, Peter On 4 February 2016 at 13:47, Peter Briggs wrote: > Hello Peter > > I'm the author of the Trimmomatic tool on the toolshed (i.e. > https://too

Re: [galaxy-dev] Trimmomatic doesn't recognise pair collection

2016-02-04 Thread Peter Briggs
Hello Peter I'm the author of the Trimmomatic tool on the toolshed (i.e. https://toolshed.g2.bx.psu.edu/view/pjbriggs/trimmomatic) - apologies for not responding sooner. The tool works for me on our production server (v15.10 from github) when using a pair of fastqs as input, by which I mean t

[galaxy-dev] Trimmomatic doesn't recognise pair collection

2016-01-22 Thread Peter van Heusden
Hi there I've got Trimmomatic installed (from the toolshed) into our local Galaxy server (server is latest commit on the dev branch from GitHub). It refuses to see a dataset pair as a valid input, however. I've tested this with two types: firstly a pair made out of 2 individual datasets (both fas