Re: [galaxy-dev] about galaxy

2015-09-02 Thread Martin Čech
There are multiple fastq formats and some tools only accept a subset of it. Please have a look at the 'FASTQ Groomer' tool it should allow you to convert your datase to the fastq format you need. Thank you for using Galaxy Martin On Wed, Sep 2, 2015 at 12:52 PM Dong Liu wrote: > Dear Galaxy >

Re: [galaxy-dev] about galaxy

2015-09-02 Thread Jennifer Hillman-Jackson
Hello, The datatype 'fastqsanger' needs to be assigned. See the Galaxy Support wiki for how to do this (and for how to double check if the type is correct): https://wiki.galaxyproject.org/Support#Tool_doesn.27t_recognize_dataset Thanks for using Galaxy, Jen -- Jennifer Hillman-Jackson Galaxy Ap

[galaxy-dev] about galaxy

2015-09-02 Thread Dong Liu
Dear Galaxy I am a new user on Galaxy online service. When I uploaded my data file in fastq form, the utility of Galaxy such as NGS:QC and manipulation, FastQC and Trim sequences can not be availabe. I dont why. can you tell me how to use Galaxy using my data? Dong Liu visiting scholar at