ectories
> the error messages disappeared and tools are running again.
>
>
> Cheers, David
>
>
> From: Peter Cock
> Sent: 24 May 2018 14:22:40
> To: David Lee
> Cc: galaxy-dev@lists.galaxyproject.org
> Subject: Re: [galaxy-dev] Conda proble
/pkgs/. After I deleted these directories
the error messages disappeared and tools are running again.
Cheers, David
From: Peter Cock
Sent: 24 May 2018 14:22:40
To: David Lee
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Conda problem
On Thu
On Thu, May 24, 2018 at 2:14 PM, David Lee wrote:
> Hi,
>
>
> I hope somebody can help me with this. I've been maintaining a Galaxy
> installation for the past few months that has suddenly developed a problem
> that I can't undo.
Which version of Galaxy? Can you tell what version of conda it is u
Hi,
I hope somebody can help me with this. I've been maintaining a Galaxy
installation for the past few months that has suddenly developed a problem that
I can't undo. I think it occurred after installing samtools and sambamba
packages which I have subsequently uninstalled but which has made n
Hi Bjoern,
thanks for the information. Then I will check for a new version next
week and check if the problem is gone.
Have a great weekend.
Cheers,
Matthias
On 31.08.2017 18:24, Björn Grüning wrote:
Hi Matthias,
conda-build only supported 80 chars limit for a long time. This has
fixed and
Hi Matthias,
conda-build only supported 80 chars limit for a long time. This has
fixed and all new packages don't have this problem.
So hopefully this PR will fix it:
https://github.com/bioconda/bioconda-recipes/pull/5912
Cheers,
bjeorn
On 31.08.2017 17:19, Matthias Bernt wrote:
> Dear list,
>
Dear list,
When running rmarkdown_wgcna I get the following error in the logs:
PaddingError: Placeholder of length '80' too short in package
bioconda::r-wgcna-1.51-r3.3.1_0.
The package must be rebuilt with conda-build > 2.0.
The command that seems to lead to this is:
Executing command:
/gp
Hi all,
I'm testing a tool with planemo and the conda dependencies are not running:
r-base
r-ggfortify
r-getoptlong
galaxy.jobs.handler INFO 2017-07-04 13:11:42,935 (2) Job dispatched
galaxy.util.object_wrapper WARNING 2017-07-04 13:11:43,062 Unable to
create dynamic subclass for , None: meta
