Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Will Holtz
> 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada > > From: Will Holtz [who...@lygos.com] > Sent: Wednesday, September 09, 2015 11:10 AM > To: Dooley, Damion > Cc: galaxy-...@lists.bx.psu.edu > Subject: Re: [galaxy-dev] galaxy.ini tool_depen

Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Dooley, Damion
se Control 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada From: Will Holtz [who...@lygos.com] Sent: Wednesday, September 09, 2015 11:10 AM To: Dooley, Damion Cc: galaxy-...@lists.bx.psu.edu Subject: Re: [galaxy-dev] galaxy.ini tool_dependency_

Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread John Chilton
Unfortunately there is nothing about the tool shed install process that requires the install procedures to result in portable environments. So yeah - if it all possible I would take Will's advice and preserve absolute paths. -John On Wed, Sep 9, 2015 at 7:10 PM, Will Holtz wrote: > Can you move

Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Will Holtz
Can you move the folder to a new drive, but mount that new drive at the same place within the filesystem? -Will On Wed, Sep 9, 2015 at 10:49 AM, Dooley, Damion wrote: > On a VM I moved the tool_dependency_dir folder to another mount since it > was getting so large that the smallish main mount w

[galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Dooley, Damion
On a VM I moved the tool_dependency_dir folder to another mount since it was getting so large that the smallish main mount was full (and changed galaxy.ini, restarted galaxy, and checked that permissions were appropriate for galaxy user). But I'm finding I have to reinstall various tool depende

Re: [galaxy-dev] galaxy.ini

2015-07-14 Thread Bjoern Gruening
Hi Bryan, if you are running a old Galaxy instance this file was called universe_wsgi.ini and was located in your Galaxy root folder. Cheers, Bjoern On 14.07.2015 12:35, Bryan Hepworth wrote: Hi For the woefully inept, where in the heck is galaxy.ini stored? I saw the documentation that s

Re: [galaxy-dev] galaxy.ini

2015-07-14 Thread Hans-Rudolf Hotz
Hi Bryan There should be a "config/galaxy.ini.sample" file. Make a copy "config/galaxy.ini" and modify it. Hans-Rudolf On 07/14/2015 12:35 PM, Bryan Hepworth wrote: Hi For the woefully inept, where in the heck is galaxy.ini stored? I saw the documentation that said change 127.0.0.1 to 0.0

Re: [galaxy-dev] galaxy.ini

2015-07-14 Thread Daniel Blankenberg
It is under config/. You’ll want to copy it from /config/galaxy.ini.sample Thanks for using Galaxy, Dan On Jul 14, 2015, at 6:35 AM, Bryan Hepworth wrote: > Hi > > For the woefully inept, where in the heck is galaxy.ini stored? > > I saw the documentation that said change 127.0.0.1 to 0.0

Re: [galaxy-dev] galaxy.ini

2015-07-14 Thread Ryan G
It's in your config/ directory. Sent from my iPhone > On Jul 14, 2015, at 6:35 AM, Bryan Hepworth > wrote: > > Hi > > For the woefully inept, where in the heck is galaxy.ini stored? > > I saw the documentation that said change 127.0.0.1 to 0.0.0.0 and the file > name, can't find it to do

[galaxy-dev] galaxy.ini

2015-07-14 Thread Bryan Hepworth
Hi For the woefully inept, where in the heck is galaxy.ini stored? I saw the documentation that said change 127.0.0.1 to 0.0.0.0 and the file name, can't find it to do so. I know it all works as I've installed a module and that all shows up and works on localhost. Thanks Bryan __