Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Will Holtz
> 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada > > From: Will Holtz [who...@lygos.com] > Sent: Wednesday, September 09, 2015 11:10 AM > To: Dooley, Damion > Cc: galaxy-...@lists.bx.psu.edu > Subject: Re: [galaxy-dev] galaxy.ini tool_depen

Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Dooley, Damion
se Control 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada From: Will Holtz [who...@lygos.com] Sent: Wednesday, September 09, 2015 11:10 AM To: Dooley, Damion Cc: galaxy-...@lists.bx.psu.edu Subject: Re: [galaxy-dev] galaxy.ini tool_dependency_

Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread John Chilton
Unfortunately there is nothing about the tool shed install process that requires the install procedures to result in portable environments. So yeah - if it all possible I would take Will's advice and preserve absolute paths. -John On Wed, Sep 9, 2015 at 7:10 PM, Will Holtz wrote: > Can you move

Re: [galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Will Holtz
Can you move the folder to a new drive, but mount that new drive at the same place within the filesystem? -Will On Wed, Sep 9, 2015 at 10:49 AM, Dooley, Damion wrote: > On a VM I moved the tool_dependency_dir folder to another mount since it > was getting so large that the smallish main mount w

[galaxy-dev] galaxy.ini tool_dependency_dir change

2015-09-09 Thread Dooley, Damion
On a VM I moved the tool_dependency_dir folder to another mount since it was getting so large that the smallish main mount was full (and changed galaxy.ini, restarted galaxy, and checked that permissions were appropriate for galaxy user). But I'm finding I have to reinstall various tool depende