Re: [galaxy-dev] trouble with python packages after galaxy update

2016-03-04 Thread Nate Coraor
On Thu, Mar 3, 2016 at 3:24 AM, Linda Bakker wrote: > Hi Guys, > So i updated my galaxy instance to release_16.01 > I usually started galaxy in a venv and used pip to install any packages my > tool needed. (in this case, numpy and scipy) > > source my_galaxy_dir/.venv/bin/activate > pip install s

Re: [galaxy-dev] trouble with python packages after galaxy update

2016-03-03 Thread Peter Cock
On Thu, Mar 3, 2016 at 9:14 AM, Peter Cock wrote: > On Thu, Mar 3, 2016 at 8:24 AM, Linda Bakker wrote: >> Hi Guys, >> So i updated my galaxy instance to release_16.01 >> I usually started galaxy in a venv and used pip to install any packages my >> tool needed. (in this case, numpy and scipy) >>

Re: [galaxy-dev] trouble with python packages after galaxy update

2016-03-03 Thread Peter Cock
On Thu, Mar 3, 2016 at 8:24 AM, Linda Bakker wrote: > Hi Guys, > So i updated my galaxy instance to release_16.01 > I usually started galaxy in a venv and used pip to install any packages my > tool needed. (in this case, numpy and scipy) > > ... > > (.venv)@server:/galaxy-dist$ ./run.sh > Activati

[galaxy-dev] trouble with python packages after galaxy update

2016-03-03 Thread Linda Bakker
Hi Guys, So i updated my galaxy instance to release_16.01 I usually started galaxy in a venv and used pip to install any packages my tool needed. (in this case, numpy and scipy) source my_galaxy_dir/.venv/bin/activate pip install scipy (dependency numpy also installed) ./run.sh But since the l