Re: [galaxy-dev] unexpanded macros

2015-12-10 Thread John Chilton
Indeed, Galaxy does need that for sure. Eric has created an issue and I think Dan has some work in progress. https://github.com/galaxyproject/galaxy/issues/1188 -John On Thu, Dec 10, 2015 at 10:37 PM, Langhorst, Brad wrote: > Hi John: > > I wonder if galaxy tools need a minimum galaxy version f

Re: [galaxy-dev] unexpanded macros

2015-12-10 Thread John Chilton
Yeah - those wrappers are not going to work with 15.05. Parameterized XML macros were added in 15.07 it looks like (http://galaxy.readthedocs.org/en/master/releases/15.07_announce.html). -John On Thu, Dec 10, 2015 at 10:28 PM, Langhorst, Brad wrote: > Hi: > > I’m at release_15.05 > > Some of thi

Re: [galaxy-dev] unexpanded macros

2015-12-10 Thread John Chilton
Hey Brad, What version of Galaxy are you on? Parameterized macros are pretty new and will not work on older Galaxies. -John On Fri, Dec 4, 2015 at 3:36 AM, Langhorst, Brad wrote: > Hi: > I just installed hisat2 and the data manager from the toolshed …. > > Some macros seem not to be expanded

[galaxy-dev] unexpanded macros

2015-12-03 Thread Langhorst, Brad
Hi: I just installed hisat2 and the data manager from the toolshed …. Some macros seem not to be expanded when I load the tool in the UI (even across galaxy restarts) e.g. I see @FTYPE@ instead of fastqsanger the data manager produces this error: Fatal error: Exit code 1 () Traceback (most rece