Perfect this is working!
thanks Jochen
On 04.01.2017 13:27, Devon Ryan wrote:
Try the following:
If you have it output to the working directory then that might solve
the problem.
Devon
--
Devon Ryan, Ph.D.
Email: dpr...@dpryan.com
Data Manager/Bioinformatician
Max
Try the following:
If you have it output to the working directory then that might solve
the problem.
Devon
--
Devon Ryan, Ph.D.
Email: dpr...@dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
79108 Freiburg
Germany
Thanks Devan,
I just changed it! I have an other question. I used this to catch the
output files:
visible="true" />
format="bam" visible="true" />
visible="true" />
my problem is that I first get an empty file in
Hi Jochen,
Don't have it use /tmp, but rather the current working directory and
then everything will work. Galaxy jobs are run in individual working
directories, so you can exploit that to ensure that files aren't
overwritten.
Devon
--
Devon Ryan, Ph.D.
Email: dpr...@dpryan.com
Data Manager/Bioin
Hi,
I have a tool that produces multiple output files a log file, two bam
files. (https://github.com/nugentechnologies/nudup)
The tool it self provides an option called --out to specify a path to a
directory with a prefix that will be added to the output files:
--out /tmp/out
this will pro