Hi Luciano,
Did you first create the galaxyWeb security group? Instructions are
available on usegalaxy.org/cloud under Step 1.
Enis
On 7/18/11 2:37 PM, Luciano Cosme wrote:
Hi,
I am trying to run Galaxy in the cloud and I am following your
screencast. I am having a problem when I need
Hello Jennifer, and thanks for your answer
Would you be able to help with a bit more detail and testing? #2
sounds like it may be the issue, but without knowing more right now,
I'll provided the next troubleshooting steps.
Yeah, I realise I was not very clear, sorry about that.
1 - this
I've had users make a similar request for the split files to appear in their history. I made my own wrapper to enable this
behavior. It presents a list of barcodes from the barcode file input. Any barcodes the user selects will have the resulting files
copied to the users history as new
Jeremy,
Usually, the users saved the files to their local machine by clicking on the
links, and then uploaded them again to the galaxy server.
It can be possible to copy the link location, and paste it into the upload
tools URL textarea.
Ideally, it would be nice for the tool developer to be
Hello everyone,
I was trying to run tophat in a local version of galaxy, but I got the
following error:
gzip: stdout: Broken pipe
[Tue Jul 19 14:10:36 2011] Processing bowtie hits
Error: could not open pipe gzip -cd
./tophat_out/tmp/left_kept_reads_missing.fq.z
It seems that when tophat is
Ah ha - thanks. I was trying to click the link, but it kept crashing,
presumably because the files are too big. The URL method seems to work,
though.
I agree that it would be nice if there was a way to bump the files directly
into your history without the download/upload steps.
Thanks again for
Hello David,
There is most likely some mismatch between the input data. Some things
to check:
First, double check that the identifiers in the reference genome exactly
match those in the RefGene gtf file and modify if necessary.
Second, make certain that your RefGene file is sorted the same
Hello Song Li,
The file extension seems to be a mismatch.
file.gz - gzip utility
Exploring the use of gunzip or zcat are options to restore a file.z.
Hopefully this helps,
Jen
Galaxy team
On 7/19/11 11:52 AM, Song Li wrote:
Hello everyone,
I was trying to run tophat in a local version of
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