[galaxy-user] regarding galaxy server problem

2011-07-24 Thread archana bhardwaj
Respected sir There is problem in galaxy during file uploading.from 2 days i am trying to upload file..still its under processing. my file is not that much big.. if there is any problem , chk the server else..please guide me some other way of uploading .. Thank you yours obediently Archana

Re: [galaxy-user] Fwd: Workflows with conditional statements

2011-07-24 Thread Clare Sloggett
Thanks for putting that in. I was wondering the same thing. The immediate use of it for me would be to have quality-checking steps at the beginning of the workflow, and to not proceed if the data does not pass. If there is any implementation of conditionals in Galaxy I would be interested! Thanks

[galaxy-user] CloudMan automates cluster customization

2011-07-24 Thread Enis Afgan
Hello all, A new version of CloudMan has just been released. The two most prominent changes in this release include: 1. Support for automated persistance of modifications to the underlying file systems 2. Support for CloudBioLinux clusters on Ubuntu 11.04 - 1. CloudMan has sup

Re: [galaxy-user] batch processing of many input files and then combining the results

2011-07-24 Thread Andrew Straw
Great -- it seems support for batch processing of many files was recently added. See "Workflows & Multiple datasets" at http://wiki.g2.bx.psu.edu/News%20Briefs/2011_05_20 . Many thanks to the Galaxy developers, and in this case Martijn Vermaat, who I think wrote this feature. Now, to return t

[galaxy-user] batch processing of many input files and then combining the results

2011-07-24 Thread Andrew Straw
Hi, (Warning: Galaxy newbie here.) I'd like to run a series of galaxy tools repeatedly on multiple input files. In other words, I have input data files [data1, data2, ..., dataN] and I want to apply [step1, step2] to each of these files to produce [output1, output2, ..., outputN]. I know that