Re: [galaxy-user] Galaxy Architecture Documentation

Dear Dave, This was very useful. Thank you so much. Specifically, I am trying to integrate Galaxy with Condor, which supports DRMAA. Is there an existing Condor job runner implementation, or any useful code for submitting Galaxy jobs to Condor? Thanks! Oren On 9/20/2011 12:21 PM, Dave Cleme

Re: [galaxy-user] Galaxy Architecture Documentation

Hi Oren, I had no idea so I went to the Galaxy mailing list archive @ Nabble ( http://gmod.827538.n3.nabble.com/Galaxy-f829901.html) and searched for Condor ( http://gmod.827538.n3.nabble.com/template/NamlServlet.jtp?macro=search_page&node=829901&query=condor). It appears that Ravi Madduri @ Argon

Re: [galaxy-user] Chip-seq

On Sep 21, 2011, at 8:47 AM, shamsher jagat wrote: > Can I analyze two bed files from Chip seq experiemnt in Galaxy? I have one > file of input and other of sample. Both these files have peak locations. Any > suggestion of a work flow in Galaxy? > > The bed file consists of called peaks don

[galaxy-user] visualize cuffdiff results

Hi when I am done with cuffdiff analysis in GALAXY, I got many tabular data output for gene, transcript, promoter and CDS differential expression testing, I wonder if there are some systematic ways to look at the data output from cuffdiff analysis? Thanks, tao __