[galaxy-user] Problem launching cloud instance

2011-10-30 Thread Clare Sloggett
Hi all, I wasn't sure whether to send this to galaxy-dev or galaxy-user. I'm having a problem launching a Galaxy instance on Amazon. I have done this in the past with no problems. I suspect I'm doing something trivial wrong but can't work out what! The problem is that after starting the

Re: [galaxy-user] Problem launching cloud instance

2011-10-30 Thread Clare Sloggett
Update - I think I can see the problem, and I think it's a bug in the image on Amazon. I might have misunderstood, but thought I would point this out as a possible cause, assuming others experience the same issue I do. Looking at the repository at

Re: [galaxy-user] Problem launching cloud instance

2011-10-30 Thread Enis Afgan
Hi Clare, Sorry about the trouble. I just disabled that if statement in the template so the option should no longer be disabled for any new cluster. My goal was to simplify usage but I'll obviously have to revisit the implementation... Sorry for the trouble and good luck with the demo tomorrow.

[galaxy-user] Downloading files

2011-10-30 Thread KNIGHT M.R.
Is there any way of downloading processed files by e.g. FTP, rather than Save as in the web browser? I have a large (9.6Gb) BAM file to download, and downloading it via the browser seems unstable for some reason. Thanks, Marc. ___ The

Re: [galaxy-user] Fwd: Cufflinks transcript-extract

2011-10-30 Thread vasu punj
You should be able to do in Biomart I think fetch seq shoudl also allow you to do the same. Vasu Subject: Fwd: [galaxy-user] Cufflinks transcript-extract -- Forwarded message --From: dongdong zhaoweiming zhaoweiming1...@yahoo.com.cnDate: Sat,

Re: [galaxy-user] Problem launching cloud instance

2011-10-30 Thread Clare Sloggett
Wow, thanks for the fast response Brad Enis! On 31/10/2011 3:04 AM, Enis Afgan eaf...@emory.edu wrote: Hi Clare, Sorry about the trouble. I just disabled that if statement in the template so the option should no longer be disabled for any new cluster. My goal was to simplify usage but I'll

[galaxy-user] Queuepool limit problem

2011-10-30 Thread Cinto Queky
Hi All, We encountered queuepool limit problem after running the workflows for a few times. We have tried to increase these 2 parameters: database_engine_option_pool_size and database_engine_option_max_overflow to 20 and 40 respectively. Are there other parameters that we can change?