[galaxy-user] (no subject)

2011-12-16 Thread Giuseppe Petrosino
Hi, I read on Readme for MACS that: "For the experiment with several replicates, it is recommended to concatenate several ChIP-seq treatment files into a single file". Now, I have illumina ChipSeq data: two files for IP samples and two files for Control samples. Is It right to use Concatenate datas

[galaxy-user] Performing operations on tab delimited text files

2011-12-16 Thread Lanelle Oni Edwards
Hi, My name is Lanelle Edwards. I am a new galaxy user. I uploaded a tab delimited text file to my history. However, the first column of the data I imported is solely chromosome number and start and end position (ALL IN ONE COLUMN) in the format chrI:100-200. My question is: How can I fi

[galaxy-user] CloudMan - The connection has timed out

2011-12-16 Thread mailing list
Hi Everyone, I'm trying to set up Cloud man. I believe I followed the instructions listed here to a T: http://wiki.g2.bx.psu.edu/Admin/Cloud After launching the instance I even waited 20 minutes before trying to access the public DNS ec2-xxx-xx-xx-xx.compute-1.amazonaws.com/cloud, but my browser

Re: [galaxy-user] Performing operations on tab delimited text files

2011-12-16 Thread Luciano Cosme
Hi Lanelle, You can go in Text Manipulation and use the "Convert delimiters to TAB" or "Cut columns from a table" and play with it a bit until you get your data in the format you want. I used it sometime ago to manipulate data for other analysis, but I don't remember exactly how I did