Re: [galaxy-user] Cufflinks merging more than one transcript on bacterial genomes

Noa, > This is one thing I would like help with- is it worth simply reducing to > nothing the max intron size? What is accepted consensus when using tophat on > bacterial genomes? I'm not sure that folks on this list have much experience with bacterial transcriptome analysis. You might try seq

Re: [galaxy-user] [galaxy-bugs] GI errors in the megablast table of results ?

Dear Sandrine, Thanks for pointing out this issue. The BLAST databases we have on Galaxy are from last year, while those on NCBI website are the latest (Jan 2012). As pointed out on NCBI website ( http://www.ncbi.nlm.nih.gov/Sitemap/sequenceIDs.html), it appears that each time any change is made t

Re: [galaxy-user] BioCloudCentral - First Launch Not Working

Hi Brad, On Tue, Jan 24, 2012 at 9:22 PM, Brad Chapman wrote: > > Greg; > >> I'm almost positive I originally started the instance via >> BioCloudCentral, and I always use Large.  I've been exclusively using >> BioCloudCentral for a few weeks now. >> >> I hadn't noticed this issue until yesterday

Re: [galaxy-user] Cloudman - Cluster could not complete job errors

Hi Dave, Sorry to hear you're having trouble and no, the behavior you describe is not the expected behavior. >From the description, unfortunately it does not sound like adding more nodes will help the case. Could you take a look at the log files for Galaxy and see if anything there is indicating a